Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g0290 ATGGAGATAATTAGAGTGAAAGAGGAAGAAACAGCGACATGTGCAGATGCAACTGGTTGTTCATCATCAACCTCATCAGGTTCATCAAGCTTTATCCCACAGCCTATGGAAGGGTTGCATGAAGTGGGTCCCCCTCCGTTTTTGTGCAAGACCTTTGAAATGGTGGAAGATCCATTCACGGACTCCATTGTGTCATGGAGCACATCTCGCAACAGCTTTGTGGTTTGGGACTCTCACAAGTTCTCTACCAACATTCTTCCTCGTTACTTCAAGCACACCAATTTTTCCAGCTTCATTCGCCAGCTCAACACCTATGGATTTAGGAAAGTTGATCCTGATCAATGGGAATTTGCGAATGAAGGTTTTTTAGCTGGACAAAGGCACTTATTGAAGACTATTAGGAGAAGAAAAAATGTATCACATGGTATGCAACAAAGAGGAGGGGATGGAGCTTGTGTCGAAGTGGGTGAGTTTGGATTGGAAGGTGAGTTGGAGAGGTTGAAGCGAGACAGGAATGTGTTGATGGCAGAAATTGTGAGGTTGAGGCAACAACAGATAAACTCGAGGGACCAATTGAGTGCCATGGAGGGCAGATTGCAAGCCACAGAGAAGAAACAACAACAGATGATGACTTTCCTTGCCAAAGCACTGAGCAATCCTTCATTCACGCAGCAATTAGTCCATAAAACCCCTGAAAATAGACACGTGTTGGGTGTTGAAATCAATAGGAAGAGGAGACTAACTTCTAGCACAAGTGTGGAGAACTTGCAACATGATGATCCTATAACATTGGTGGACTATTCAAATCTAAGCCATGAAAAAGAATTGGAAACTAATTTTTACTCAGAAGCATATGATAGTGAACTTCACGGTGAGATCAAGGAGCCCGGATCAAGTTCGGTTATGACAATGGGTAGTGGGAGTGATTTTGGTTTAGATGAGGATACAATCTTGGAGGACTTGCTTAACAAAGACTTGGTTACTGGGAATCCAGAGGATGAAATTATAATTGGTAATGTTTCACAAGTTGATGTGCCAGTGGAGGATTTGGTAGCTAAACCTGATGATTGGAGTGAACAATTTTAG 1086 0.4263 MEIIRVKEEETATCADATGCSSSTSSGSSSFIPQPMEGLHEVGPPPFLCKTFEMVEDPFTDSIVSWSTSRNSFVVWDSHKFSTNILPRYFKHTNFSSFIRQLNTYGFRKVDPDQWEFANEGFLAGQRHLLKTIRRRKNVSHGMQQRGGDGACVEVGEFGLEGELERLKRDRNVLMAEIVRLRQQQINSRDQLSAMEGRLQATEKKQQQMMTFLAKALSNPSFTQQLVHKTPENRHVLGVEINRKRRLTSSTSVENLQHDDPITLVDYSNLSHEKELETNFYSEAYDSELHGEIKEPGSSSVMTMGSGSDFGLDEDTILEDLLNKDLVTGNPEDEIIIGNVSQVDVPVEDLVAKPDDWSEQF* 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g0290 361 Coils Coil 164 184 - -
Apr9g0290 361 SUPERFAMILY "Winged helix" DNA-binding domain 43 136 IPR036390 -
Apr9g0290 361 PRINTS Heat shock factor (HSF) domain signature 47 70 IPR000232 GO:0003700|GO:0006355|GO:0043565
Apr9g0290 361 PRINTS Heat shock factor (HSF) domain signature 85 97 IPR000232 GO:0003700|GO:0006355|GO:0043565
Apr9g0290 361 PRINTS Heat shock factor (HSF) domain signature 98 110 IPR000232 GO:0003700|GO:0006355|GO:0043565
Apr9g0290 361 SMART hsfneu3 43 136 IPR000232 GO:0003700|GO:0006355|GO:0043565
Apr9g0290 361 Pfam HSF-type DNA-binding 47 136 IPR000232 GO:0003700|GO:0006355|GO:0043565
Apr9g0290 361 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-6B 20 325 - -
Apr9g0290 361 ProSitePatterns HSF-type DNA-binding domain signature. 86 110 IPR000232 GO:0003700|GO:0006355|GO:0043565
Apr9g0290 361 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 20 325 IPR027725 -
Apr9g0290 361 Gene3D - 40 137 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g0290 Apr-Chr9 3792694 3795571 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g0290 33 360 HSF AT2G26150 53.453 3.08e-119 347
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Apr9g0290 HSF_DNA-bind 2.1e-31 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g0290 K09419 - gmx:100778558 488.034
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g0290 9 3792694 3795571 Apr5g1399 5 18112229 18114210 PCT