Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g0278 ATGGTGCCAGAAGGAGCAACGTTGTTAGAGATAAAGAAGGCATTCAGGGATGTGGACAATGTTCTATATGATTGGACAGATTCACCATCATCAGATTATTGCGCTTGGAGAGGGATCACTTGTGATAATGTTACCTTTAATGTTGTTGCACTCAATCTTTCAGGGTTGAATCTTGATGGTGAAATTTCACCTGCCATAGGGAACCTTAAGAGTTTGGTCTCTATTGACCTCAGAGAAAACCGGTTATCAGGGCAGATACCAGATGAGATTGGTGACTGTTCTTCCTTGAAGAGCTTGGACTTGTCTTTTAATGAAATAAGAGGGGATATACCATTTTCAATTTCTAAGTTGAAACAACTGGAAAATCTGATTTTGAAAAATAATCAGTTGATTGGACCAATTCCTTCAACTTTGTCTCAGATTCCTAATTTGAAGATTCTAGACCTGGCTCAAAACAATCTCAGTGGTGAGATACCAAGGCTTATATACTGGAATGAAGTTTTGCAGTATCTGGGGTTGAGAGGGAACAATTTGGTCGGTTCACTATCACCAGACATGTGCCAGTTAACAGGGTTGTGGTATTTTGATATGAGAAACAATAGCTTGACAGGAAGTATTCCAGAAAACATAGGCAACTGTACTGCGTTCCAGGTCTTGGATTTATCCTACAACCAGCTAACTGGAGAGATACCATTCAATATTGGATTCTTGCAAGTAGCAACATTGTCATTGCAAGGCAATAAACTCTCTGGGCACATTCCTTCTGTGATCGGTCTCATGCAAGCACTTGCTGTCTTAGACTTGAGTTGTAACATGTTAAGTGGATCAATCCCTTCTATTTTGGGAAATTTGACTTACACAGAAAAATTGTACTTGCATGGAAACAAGCTGACTGGCCTCATTCCCCCAGAGCTTGGGAATATGACAAAGCTTCACTATTTGGAACTGAATGATAACCATATAGATGGACATATCCCACCTGAACTTGGAAAGCTTACTGATCTGTTTGACTTAAATGTTGCTAACAACAATCTTGAGGGGCCAATTCCTGGTAATATTAGCTCATGTAAAAATCTTAACAGCCTCAATGTGCACGGGAACAGATTGAATGGAACTATTCCCCCAGCTTTGCAGAGCTTGGAGAGCATGACCTCTCTGAATCTTTCTTCCAACAATCTTCAAGGCGCAATTCCAATTGAACTGTCACGGATTGGTAATTTGGATACATTGGATATTTCAAACAATAATTTAGTTGGTTTCATCCCTTCTTCCCTTGGTGACTTGGAACATCTTCTGAAGCTGAATCTGAGCAGAAACAATTTAACAGGAGTTATTCCAGCTGAATTTGGAAATCTTAGAAGTGTTATGGAAATTGATCTTTCAAATAATGAACTCTCTGGGTTGATTCCTGACGAACTTAGTCAGCTTCAGAACATGATATCCTTGAGGCTTGAAAACAACAAATTAACTGGGGATGTGGCATCACTTACAAATTGCCTTAGTCTCTCTCTCCTTAACGTGTCCTATAACAAACTAGTTGGTGTTATTCCCACAAACAACAACTTTTCCAGGTTTCCCCCTGACAGTTTCATTGGAAACCCTGGCCTTTGTGGTAATTGGCTGAATTTGCCATGTCATGGCTCTCACCCTGCAGAGCGAGTTACATTATCTAAGGCAGCTATTCTGGGAATTACACTTGGAGCCCTTGTAATTCTTCTTATGATATTGCTGGCAGCTTGCCGACCCCACAATCCATCTCCTTTTGCTGATGGATCACTTGACAAGCCAGTTAATTACTCACCTCCAAAACTAGTGATTCTTCATATGAATATGGCACTTCATGTGTATGAAGATATCATGAGGATGACTGAAAACCTGAGTGAGAAGTATATAATTGGATATGGTGCATCAAGTACAGTTTATAAATGTGTTCTCAAGAATTGCAAACCAGTGGCCATCAAAAGGCTCTATTCTCACTATCCACAATGCTTGAAAGAATTTGAAACTGAACTTGAGACAGTTGGAAGCATTAAGCACAGGAATCTGGTCAGTCTCCAAGGCTATTCTTTGTCCCCATATGGCCACCTTCTGTTTTATGACTACATGGAAAATGGCAGTCTATGGGATCTTCTTCATGGACCCACCAAGAAGAAGAAACTTGACTGGGATTTGCGTCTAAAAATAGGACTTGGAGCAGCACAAGGGCTAGCTTATCTACACCATGATTGCAGTCCTCGAATCATCCACAGGGATGTGAAGTCATCGAACATTTTATTAGATGCTGACTTTGAGCCGCATCTCACTGATTTTGGCATTGCCAAAAGTCTCTGTCCTTCAAAGTCCCATACTTCTACTTACATAATGGGCACAATTGGCTACATAGACCCTGAGTATGCTAGAACATCACGACTCACTGAGAAGTCTGATGTGTACAGCTATGGTATTGTTTTACTTGAGTTGCTAACTGGGAGAAAAGCTGTTGACAATGAATCCAATCTCCATCATCTGATTTTGTCCAAGACAGCAAACAATGCTGTAATGGAAACAGTTGATCCAGACATTACGGCCACATGCAAGGACCTTGGAGCTGTGAAAAAGGTTTATCAGCTTGCACTACTATGCACAAAGAGGCAACCAGCTGATAGACCCACAATGCATGAAGTGGCACGTGTGCTGGGAAGTCTTGTGCCATCAAGCTTCCCACCAAAACAACCAGCTACACTCCCACCTCCTTCAAATCCATCAGCTAAAGTGCCATGCTACATGGATGAGTATGCAAATCTCAAGACTCCACACTTGGTTAATTGTCCATCCATGAGCACTTCTGATGCCCAGCTCTTCCTCAAGTTTGGAGAGGTAATCTCTCAGAACAGTGAGGATTTTGAAAGAGCCAAATCTAAGAATCATGTATATTAA 2916 0.4105 MVPEGATLLEIKKAFRDVDNVLYDWTDSPSSDYCAWRGITCDNVTFNVVALNLSGLNLDGEISPAIGNLKSLVSIDLRENRLSGQIPDEIGDCSSLKSLDLSFNEIRGDIPFSISKLKQLENLILKNNQLIGPIPSTLSQIPNLKILDLAQNNLSGEIPRLIYWNEVLQYLGLRGNNLVGSLSPDMCQLTGLWYFDMRNNSLTGSIPENIGNCTAFQVLDLSYNQLTGEIPFNIGFLQVATLSLQGNKLSGHIPSVIGLMQALAVLDLSCNMLSGSIPSILGNLTYTEKLYLHGNKLTGLIPPELGNMTKLHYLELNDNHIDGHIPPELGKLTDLFDLNVANNNLEGPIPGNISSCKNLNSLNVHGNRLNGTIPPALQSLESMTSLNLSSNNLQGAIPIELSRIGNLDTLDISNNNLVGFIPSSLGDLEHLLKLNLSRNNLTGVIPAEFGNLRSVMEIDLSNNELSGLIPDELSQLQNMISLRLENNKLTGDVASLTNCLSLSLLNVSYNKLVGVIPTNNNFSRFPPDSFIGNPGLCGNWLNLPCHGSHPAERVTLSKAAILGITLGALVILLMILLAACRPHNPSPFADGSLDKPVNYSPPKLVILHMNMALHVYEDIMRMTENLSEKYIIGYGASSTVYKCVLKNCKPVAIKRLYSHYPQCLKEFETELETVGSIKHRNLVSLQGYSLSPYGHLLFYDYMENGSLWDLLHGPTKKKKLDWDLRLKIGLGAAQGLAYLHHDCSPRIIHRDVKSSNILLDADFEPHLTDFGIAKSLCPSKSHTSTYIMGTIGYIDPEYARTSRLTEKSDVYSYGIVLLELLTGRKAVDNESNLHHLILSKTANNAVMETVDPDITATCKDLGAVKKVYQLALLCTKRQPADRPTMHEVARVLGSLVPSSFPPKQPATLPPPSNPSAKVPCYMDEYANLKTPHLVNCPSMSTSDAQLFLKFGEVISQNSEDFERAKSKNHVY* 972
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g0278 971 Pfam Leucine rich repeat N-terminal domain 4 42 IPR013210 -
Apr9g0278 971 ProSiteProfiles Leucine-rich repeat profile. 143 165 IPR001611 GO:0005515
Apr9g0278 971 Pfam Leucine rich repeat 95 154 IPR001611 GO:0005515
Apr9g0278 971 Pfam Leucine rich repeat 262 321 IPR001611 GO:0005515
Apr9g0278 971 Pfam Leucine rich repeat 406 465 IPR001611 GO:0005515
Apr9g0278 971 ProSiteProfiles Protein kinase domain profile. 626 896 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr9g0278 971 CDD STKc_IRAK 632 895 - -
Apr9g0278 971 SUPERFAMILY Protein kinase-like (PK-like) 603 892 IPR011009 -
Apr9g0278 971 ProSiteProfiles Leucine-rich repeat profile. 95 118 IPR001611 GO:0005515
Apr9g0278 971 Gene3D Ribonuclease Inhibitor 239 324 IPR032675 -
Apr9g0278 971 Gene3D Ribonuclease Inhibitor 421 547 IPR032675 -
Apr9g0278 971 SUPERFAMILY RNI-like 52 491 - -
Apr9g0278 971 SMART LRR_typ_2 260 283 IPR003591 -
Apr9g0278 971 SMART LRR_typ_2 428 451 IPR003591 -
Apr9g0278 971 SMART LRR_typ_2 141 165 IPR003591 -
Apr9g0278 971 SMART LRR_typ_2 380 404 IPR003591 -
Apr9g0278 971 SMART LRR_typ_2 189 213 IPR003591 -
Apr9g0278 971 SMART LRR_typ_2 69 93 IPR003591 -
Apr9g0278 971 SMART LRR_typ_2 308 332 IPR003591 -
Apr9g0278 971 SMART LRR_typ_2 452 475 IPR003591 -
Apr9g0278 971 Gene3D Ribonuclease Inhibitor 165 238 IPR032675 -
Apr9g0278 971 Gene3D Phosphorylase Kinase; domain 1 599 701 - -
Apr9g0278 971 Gene3D Ribonuclease Inhibitor 3 164 IPR032675 -
Apr9g0278 971 Gene3D Ribonuclease Inhibitor 325 420 IPR032675 -
Apr9g0278 971 Pfam Protein kinase domain 629 889 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr9g0278 971 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 4 946 - -
Apr9g0278 971 ProSitePatterns Protein kinases ATP-binding region signature. 632 654 IPR017441 GO:0005524
Apr9g0278 971 Gene3D Transferase(Phosphotransferase) domain 1 702 899 - -
Apr9g0278 971 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE ERECTA 4 946 - -
Apr9g0278 971 ProSitePatterns Serine/Threonine protein kinases active-site signature. 747 759 IPR008271 GO:0004672|GO:0006468
Apr9g0278 971 SMART serkin_6 626 892 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g0278 Apr-Chr9 3659027 3668254 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g0278 72 958 Receptor kinase-like Gene Family AT5G07180 65.203 0.0 1129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XIIIb Apr9g0278 Pkinase 2.9e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g0278 K20718 - gmx:100782307 1786.54