LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Apr9g0273	ATGGGGTGGGGTCACCTTGGAAGGCATGGCTCAGATTCCGGCGACGCTGCGGAAGCAGGTCCCAGCACCACCACCGAGCCACGCCGCTTCCCTCTGGCGGCTCAGCCGGAAATGATGCGAGCTGCCGAAAAGGATGACCAATACGCCTCTTTCGTTTACGAAGCGTGTCGTGACGCTTTCCGTCACCTCTTTGGTACCAGAGTCGCGGTGGCTTATCAAAACGAGACGAAACTTTTAGGGCAAATGCTTTACTATTTGCTCACAACTGGTTCGGGACAACAAACCCTTGGAGAGGAATACTGCGACATCACTCAGGTTGCAGGACCTTATGGACTTCCTCCTACCCCTGCAAGGCGTGCTCTTTTCATTGTATACCAGACGGCTATTCCATATATTGCCGAACGGATTAGTTCTAGAATTGCTTCACGAGGCATTGTCCTTGCTGATTCAGACTCTGCTGAGGGTTATGCTGAAAGTGTACGCAGGACTGGTAGTTCTCAGATTTCTGGTGCCAGTGAACTTCCTCCTTCATCCACGCCAGGACAATCTGTTACAACTTTGACAAGGTTGAAGAGGAAACTGAGTGGATTTTGGTTGCATTTGGTTCGGAGATGGCCTACGATGCTTCCTTTTGTTCGTGAGTTGTTGCAGTTGGTTCTTCGTGCTAACCTCATGTTTTTCTATTTTGAAGGCCTCTATTATCATATATCCAAACGTGCTGCAGGCATTCGGTATGTGTTCATTGGTAAAGCATCTAATCAAAGACCCAGATACCAAATACTAGGGGTATTTCTGTTGATTCAACTTTGTATAATAGCTGCTGAAGGGCTGCGTCGAAGAAATTTTACTTCAATTGCTGGTTCAGTTCATCAGACATCCTTGGCAACCCACTACAGCTCAGCAGGACATGGTTTGCCTGTTTTGAATGAAGAGGGTACTCTGGCAACTCCAGATATCGACAAAGGAAGTTGGGTCTCTGATTCTTCATCTTCTGAGTATCCTGGAACTAGTGGGGTTAGTAAATGCACACTTTGCCTGAGTAATCGTCAACACCCAACTGCTACTTCCTGTGGCCATGTATTCTGCTGGAACTGTATCACGGAATGGTGCAACGAAAAGCCAGAGTGCCCTCTTTGCCGCACCCCCATAACACACTCAAGTCTAGTATGTGTATATCATTCAGACTTCTAG	1191	0.4761	MGWGHLGRHGSDSGDAAEAGPSTTTEPRRFPLAAQPEMMRAAEKDDQYASFVYEACRDAFRHLFGTRVAVAYQNETKLLGQMLYYLLTTGSGQQTLGEEYCDITQVAGPYGLPPTPARRALFIVYQTAIPYIAERISSRIASRGIVLADSDSAEGYAESVRRTGSSQISGASELPPSSTPGQSVTTLTRLKRKLSGFWLHLVRRWPTMLPFVRELLQLVLRANLMFFYFEGLYYHISKRAAGIRYVFIGKASNQRPRYQILGVFLLIQLCIIAAEGLRRRNFTSIAGSVHQTSLATHYSSAGHGLPVLNEEGTLATPDIDKGSWVSDSSSSEYPGTSGVSKCTLCLSNRQHPTATSCGHVFCWNCITEWCNEKPECPLCRTPITHSSLVCVYHSDF*	397

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Apr9g0273	396	MobiDBLite	consensus disorder prediction	1	31	-	-
	Apr9g0273	396	Pfam	Zinc finger, C3HC4 type (RING finger)	341	385	-	-
	Apr9g0273	396	SUPERFAMILY	RING/U-box	341	385	-	-
	Apr9g0273	396	Pfam	Pex2 / Pex12 amino terminal region	45	279	IPR006845	-
	Apr9g0273	396	ProSitePatterns	Zinc finger RING-type signature.	357	366	IPR017907	-
	Apr9g0273	396	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	323	393	IPR013083	-
	Apr9g0273	396	SMART	ring_2	342	379	IPR001841	-
	Apr9g0273	396	PANTHER	PEROXISOME ASSEMBLY PROTEIN 10	26	393	-	-
	Apr9g0273	396	CDD	RING-HC_PEX10	341	380	-	-
	Apr9g0273	396	MobiDBLite	consensus disorder prediction	164	183	-	-
	Apr9g0273	396	ProSiteProfiles	Zinc finger RING-type profile.	342	380	IPR001841	-
	Apr9g0273	396	PANTHER	PEROXISOME BIOGENESIS FACTOR 10	26	393	-	-

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Apr9g0273	326	392	C3H Transcription Factor Family	AT4G28270	28.916	5.98e-10	56.6

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Apr9g0273	K13346		-	gmx:100783914	717.613