Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g0268 ATGGATGCAGCTGCTCCGTACAATCCTCGTACGGTCGAAGAAGTCTTTAGGGATTTCAAGGGTCGCAGAGTTGCTTTGATTAAAGCCCTCACTACTGAGAAAGAAAATCTTTGCCTCTATGGATTTCCTAGTGAGCAGTGGGAGGTCAATCTGCCAGCTGAGGAGGTGCCCCCAGAGCTTCCAGAGCCAGCATTGGGCATTAACTTCGCCAGAGATGGGATGCAAGAAAAGGACTGGCTGTCTTTGGTCGCTGTACACAGTGATGCTTGGTTACTTGCTGTGGCTTTTTATTTTGGTGCTAGGTTTGGATTTGATAAGGCTGATAGGAAGCGACTATTTAATATGATAAATGATCTTCCAACAATATTTGAGGTTGTTACAGGGATGGCCAAGAAACAAGGAAAGGAAAAGTCATCAGTTTCAAATCATAGCAGTAACAAATCAAAATCAAACTCTAAGCGAGGTTCCGAAACAAAGTATTCAAAATCAATGCAATCAAAGGAAGAGGATGAGGAGGATCTAGGATTGGAAGAGGAAGACGAGGAGGAACATGGAGAGACTTTGTGTGGGGCATGTGGAGAGAGCTATGCTGCTGATGAGTTCTGGATTTGCTGTGACATTTGTGAGAAATGGTTCCATGGAAAGTGTGTTAAGATTACTCCTGCAAGGGCAGAGCATATCAAGCAATACAAATGTCCATCTTGCAGCAACAAGAGAGCTCGACCTTGA 729 0.4417 MDAAAPYNPRTVEEVFRDFKGRRVALIKALTTEKENLCLYGFPSEQWEVNLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDAWLLAVAFYFGARFGFDKADRKRLFNMINDLPTIFEVVTGMAKKQGKEKSSVSNHSSNKSKSNSKRGSETKYSKSMQSKEEDEEDLGLEEEDEEEHGETLCGACGESYAADEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSNKRARP* 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g0268 242 Pfam Alfin 11 128 IPR021998 GO:0006355|GO:0042393
Apr9g0268 242 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 179 237 IPR013083 -
Apr9g0268 242 CDD PHD_AL_plant 188 238 IPR044104 -
Apr9g0268 242 SMART PHD_3 188 236 IPR001965 -
Apr9g0268 242 MobiDBLite consensus disorder prediction 134 182 - -
Apr9g0268 242 PANTHER CPG BINDING PROTEIN 4 242 IPR045104 GO:0006355|GO:0042393
Apr9g0268 242 SUPERFAMILY FYVE/PHD zinc finger 178 239 IPR011011 -
Apr9g0268 242 ProSitePatterns Zinc finger PHD-type signature. 189 235 IPR019786 -
Apr9g0268 242 MobiDBLite consensus disorder prediction 150 169 - -
Apr9g0268 242 ProSiteProfiles Zinc finger PHD-type profile. 186 238 IPR019787 -
Apr9g0268 242 PANTHER PHD FINGER PROTEIN ALFIN-LIKE 3-LIKE ISOFORM X1 4 242 - -
Apr9g0268 242 Pfam PHD-finger 189 238 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g0268 Apr-Chr9 3500793 3517269 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g0268 3 241 Alfin-like Transcription Factor Family AT3G42790 76.096 1.76e-118 336
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Apr9g0268 Alfin 2.3e-55 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g0268 - - gmx:100170697 431.795