Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g0261 ATGTCGACGGTGTATGTTCTAGAACCACCGACCAAGGGGAAGGTGGTCGTGAACACCACGCGCGGCCCTTTGGACATTGAACTCTGGCCGAAAGAGGCTCCTAAAGCGGTGAGGAACTTCGTGCAACTCTGCCTCGAAGGCTATTACAACAACACCATCTTCCACCGCATCATCAAAGACTTCCTCATCCAAGGTGGCGACCCCACCGCCTCCGGCACCGGAGGTGAAAGCATTTATGGCGGCGTTTTCGCTGATGAGTTTCATTCGCGTTTGAAATTCAAGCACAGAGGATTAGTTGCAATGGCCAATACTGGATCTCCGAATTCCAATGGAAGCCAGTTTTTCGTTACTCTTGATCGCTGTGACTGGCTCGATCGCAAGCACACGATTTTTGGAAAGGTGACGGGAGATACAATGTATAACCTTTTGAGGTTGGGTGAAGTCGAAACTGATAAGAATGACCGGCCTTTGGATCCGGCTCCGAAGATATTATCAGTTGAGGTGTTATGGAATCCATTTGAAGATATTATTCCGAGAACACTTCAGAAAACTCAGATTGAAGCTAAACCTGATACGGAGAGTAAAGAGTCGAAGAAGAAAGGTGTAAAAAAATTGAACTTGCTTTCGTTTGGGGAGGAAGCTGAAGAGGAGGAAAAGGAATTGGCATCAGTGAAGCAAAAAATTAAGAGCAGTCACGATGTCTTGAATGATCCTCGTCTTCTAAAGGAAGAAACACTTGATAATGAAGTGAGTTCATCTGATGGTAAATCAACAAGAGATTTACAGCTATCTGTAAGGGATGCACTTAACTCAAAGAAAGAAGAGCCTCAAAAAGATTCAGAAGCTGGTGACATGGCTCATCTTGATTCCAGTGATGATGGTGATGAAGCAGATTTTGATGCAAGAATGCGCAGGCAAATACTCAAAAAGCGGAAGGAATTGGGTGATCACCCTCCCAAACCGAAGTTGCGAACTGCAGGAAGGTCTAGTCCAGAGAACCAGGATGCATCAGCGACTAGGTCTAATGCTGTAAGTGATGAGGATCAACCAAAGGTGGAGAAATTGTCCTTGAAGAAAAAGGGAGTAGGATCTGAAGCAAGAGCTGAACGAATGGCTAATGCTGATGCAGATTTGCAGCTACTGAATGAAGCTGAGAGAGGAAGACAATTGCAGAAGCAGAAGAAACGCAGACTTCAAGGGCGTGAAAATGATGTTCTGGCCAAACTTGAAAAATTTAAGAATTCTTTATCAGCGAAGGCCACATCCACAGCTGGTGAATCTGAAAATGTTAATAATGAGGAATTGTCTGACTGGAGAGATGTTACGTTAAAATTTGCCCCCGAGTCTGGCAAGGATCGCATGTCTCGCACTGAGGACCCAAATGACTATGTTGTGCATGATCCTCTTTTGGAGAAGGGGAAAGAGAAGTTTAATAGGATGCTAGCCAAACAAAAGAGACGAGAACGAGAGTGGGCTGGAAGATCCCTTACTTGA 1494 0.4491 MSTVYVLEPPTKGKVVVNTTRGPLDIELWPKEAPKAVRNFVQLCLEGYYNNTIFHRIIKDFLIQGGDPTASGTGGESIYGGVFADEFHSRLKFKHRGLVAMANTGSPNSNGSQFFVTLDRCDWLDRKHTIFGKVTGDTMYNLLRLGEVETDKNDRPLDPAPKILSVEVLWNPFEDIIPRTLQKTQIEAKPDTESKESKKKGVKKLNLLSFGEEAEEEEKELASVKQKIKSSHDVLNDPRLLKEETLDNEVSSSDGKSTRDLQLSVRDALNSKKEEPQKDSEAGDMAHLDSSDDGDEADFDARMRRQILKKRKELGDHPPKPKLRTAGRSSPENQDASATRSNAVSDEDQPKVEKLSLKKKGVGSEARAERMANADADLQLLNEAERGRQLQKQKKRRLQGRENDVLAKLEKFKNSLSAKATSTAGESENVNNEELSDWRDVTLKFAPESGKDRMSRTEDPNDYVVHDPLLEKGKEKFNRMLAKQKRREREWAGRSLT* 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g0261 497 MobiDBLite consensus disorder prediction 239 254 - -
Apr9g0261 497 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 28 43 IPR002130 GO:0000413|GO:0003755
Apr9g0261 497 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 54 66 IPR002130 GO:0000413|GO:0003755
Apr9g0261 497 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 98 113 IPR002130 GO:0000413|GO:0003755
Apr9g0261 497 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 113 125 IPR002130 GO:0000413|GO:0003755
Apr9g0261 497 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 126 141 IPR002130 GO:0000413|GO:0003755
Apr9g0261 497 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED 5 209 IPR044666 -
Apr9g0261 497 CDD cyclophilin_CeCYP16-like 8 180 - -
Apr9g0261 497 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 15 168 IPR002130 GO:0000413|GO:0003755
Apr9g0261 497 MobiDBLite consensus disorder prediction 239 403 - -
Apr9g0261 497 MobiDBLite consensus disorder prediction 346 372 - -
Apr9g0261 497 PANTHER SPLICEOSOME-ASSOCIATED PROTEIN CWC27 HOMOLOG 5 209 - -
Apr9g0261 497 Coils Coil 381 401 - -
Apr9g0261 497 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 22 159 IPR002130 GO:0000413|GO:0003755
Apr9g0261 497 MobiDBLite consensus disorder prediction 266 323 - -
Apr9g0261 497 Coils Coil 207 234 - -
Apr9g0261 497 MobiDBLite consensus disorder prediction 417 431 - -
Apr9g0261 497 MobiDBLite consensus disorder prediction 432 466 - -
Apr9g0261 497 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 49 66 IPR020892 GO:0003755|GO:0006457
Apr9g0261 497 MobiDBLite consensus disorder prediction 417 466 - -
Apr9g0261 497 Gene3D - 2 183 IPR029000 -
Apr9g0261 497 SUPERFAMILY Cyclophilin-like 14 182 IPR029000 -
Apr9g0261 497 MobiDBLite consensus disorder prediction 327 345 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g0261 Apr-Chr9 3428179 3433657 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g0261 9 173 U-box Gene Family AT5G67530 49.091 1.02e-42 158
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g0261 K12737 - gmx:100793148 821.617
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g0261 9 3428179 3433657 Apr9g0261 9 3428179 3433657 ECH