Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g0260 ATGTCTTCCCATGGTGGTACCTCGTCACCCTTAAATGCCACCATGGTGGCTGTCGATAAAGACAAGAATAGTAGTCATGCCTTTCGCTGGACAATTAATCGTATTGATAATCCTGTCATCATTGCCGTCCATGTCAAGAACAAAAATATTTCTCAGCAGGGCTCCAATGTTCATCCCCCCGATGAAGACGATTTAGCCAATGTTTTCAATCCCTTACGTCAAATGTGCCATCACAATGTCATTAAGATGAAAGAAGCCGTAATCGATGATACTGATGTTGCTAGAGGAATTTTGGAATATGCACACAGAAATCGCATCCACACTATAGTCCTTGGTGCACCCTACTCGGCCAAGGGTACTTTGTCATTCGCAAGGTCTTTGAACCTGAGGACAGGAAGCAAGAAATATAAAGGCCAAGATGTGCCAGCAGCCATAATGAAATCAGCCCCAGATTATAGTTCCGTATATGTAATTTCAAAAGGGAAGATAGTGGAAGCTCGACCAGCAATACGCCCAATGGTAAACATGGTTGCACCGCAAAACGAAAATGGAGTAAGGACACAATCATCTAGAAGAGGGAGCACCAATGGAAGATCAGAAAGATCACCTCTAAATGAAATGTCAAGGTGTTCTTCAGCTAGTCAGTCAATGGACAACATTTATCTTTCCAATCGTGGACAGAGGTCCCCATTTGGCCATAGCCCAAGCTCAGGTGAAAGTGACTCTTCAGGGTCACATAAATATGGGTCAACGGATACAACTAAACAAGATGGTGATTTAAGCTTTGCATCAGATTCCGAACCCTCAGGAGATATGGAAGCTGAGATGAAAAGATTGAGGCTCAAATTGAAGCAAACTATGGATATGTACAACTCAGCTTGCAAAGAAGCAATATCAGCCCAAAACAAGGCTAAAGAGATTAACCAATGGAAACTGGAGGAGGCACGTAAAGTTGAGGAAGTTAAGGTGTCTAAGGAGGCAGCTCTTGCCCTGGCAGAACAAGAGAAGGCTAAAGCCAAAGCTGCCTTGGAAGCAGCTGAAGAAGCCATGAAGATGGCTGAAAAGGAAGCACAAAGAAGATTGCGAGCAGAAATGAAGGCCAAAAGAGAGGCAGAAGAAAAGGATAGAGCATTAAATGACTTGGCTAGCAAGGATATTCGATATAGAAAATATACCATAGATGATATTGAAAATGCTACTCAAAATTTCTCCCTATCAATGAAAATAGGTGAAGGTGGATATGGACCTGTGTTTAAAGGACAACTTGACCACACCCCAGTTGCAATCAAAATTTTAGATCCTAATGCTTCCCATGGCAGGAGGCAGTTCCAACAAGAGGTTGAGGTATTATGCAGCATAAGGCATCCAAACATGGTCCTTCTCCTTGGTGCATGTCCTGACTATGGATGCTTAGTGTATGAATACTTGGATAATGGTAGCTTAGAAGATAGATTAATGAGGAAAAATAACAGCCCCCCTATTCCATGGAGCAAACGTTTCGAAATAGCTTCTGAGATTGCAACTTCACTTCTTTTCCTTCACCAAGCAAAGCCTGAGCCAATCGTGCACCGCGACCTTAAACCAGCCAACATTCTCTTAGACAAGAACTATGTGAGCAAAATAAGTGATGTTGGTCTGGCAAGACTAGTGCCATCTTCTGTGGCTGATTCTGTCACACAATATCACTTAACTGCAGCTGCTGGAACCTTTTGTTACATTGATCCTGAATACCAACAAACAGGAATGTTAACAACAAAATCAGATATATATTCCTTGGGGATAATGTTACTACAAATAATCACAGCCAAGCCTCCTATGGGGCTAGCTCACCATGTTAAGAAGGCAATTGAAAAGGGAACATTTTCAGATATGCTTGATCCTATGGTCACTGATTGGCCTATTGAAGAGGCTCTTGCATTTGCCGAACTCTCATTGAGTTGTGCAGAACTCAGCAAAAAGGATAGGCCTGATCTTGCAACAGTAGTAGTGCCAGAGCTTAACCGTTTAAGGAACTTTGGATATGCATCGATGAGTAATCAGAATCTTTGCCATGTAACACGGCCTCCTACGCCTACGCGAAGTCCACGTTGA 2091 0.4266 MSSHGGTSSPLNATMVAVDKDKNSSHAFRWTINRIDNPVIIAVHVKNKNISQQGSNVHPPDEDDLANVFNPLRQMCHHNVIKMKEAVIDDTDVARGILEYAHRNRIHTIVLGAPYSAKGTLSFARSLNLRTGSKKYKGQDVPAAIMKSAPDYSSVYVISKGKIVEARPAIRPMVNMVAPQNENGVRTQSSRRGSTNGRSERSPLNEMSRCSSASQSMDNIYLSNRGQRSPFGHSPSSGESDSSGSHKYGSTDTTKQDGDLSFASDSEPSGDMEAEMKRLRLKLKQTMDMYNSACKEAISAQNKAKEINQWKLEEARKVEEVKVSKEAALALAEQEKAKAKAALEAAEEAMKMAEKEAQRRLRAEMKAKREAEEKDRALNDLASKDIRYRKYTIDDIENATQNFSLSMKIGEGGYGPVFKGQLDHTPVAIKILDPNASHGRRQFQQEVEVLCSIRHPNMVLLLGACPDYGCLVYEYLDNGSLEDRLMRKNNSPPIPWSKRFEIASEIATSLLFLHQAKPEPIVHRDLKPANILLDKNYVSKISDVGLARLVPSSVADSVTQYHLTAAAGTFCYIDPEYQQTGMLTTKSDIYSLGIMLLQIITAKPPMGLAHHVKKAIEKGTFSDMLDPMVTDWPIEEALAFAELSLSCAELSKKDRPDLATVVVPELNRLRNFGYASMSNQNLCHVTRPPTPTRSPR* 697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g0260 696 CDD STK_N 16 161 - -
Apr9g0260 696 Pfam Universal stress protein family 15 113 IPR006016 -
Apr9g0260 696 SMART serkin_6 403 666 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr9g0260 696 Gene3D HUPs 6 126 IPR014729 -
Apr9g0260 696 Pfam Protein tyrosine and serine/threonine kinase 405 662 IPR001245 GO:0004672|GO:0006468
Apr9g0260 696 ProSitePatterns Serine/Threonine protein kinases active-site signature. 521 533 IPR008271 GO:0004672|GO:0006468
Apr9g0260 696 Gene3D Phosphorylase Kinase; domain 1 381 475 - -
Apr9g0260 696 MobiDBLite consensus disorder prediction 175 272 - -
Apr9g0260 696 PANTHER OS02G0152300 PROTEIN 9 696 - -
Apr9g0260 696 Coils Coil 315 375 - -
Apr9g0260 696 ProSiteProfiles Protein kinase domain profile. 403 666 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr9g0260 696 MobiDBLite consensus disorder prediction 180 263 - -
Apr9g0260 696 Gene3D Transferase(Phosphotransferase) domain 1 476 682 - -
Apr9g0260 696 SUPERFAMILY Protein kinase-like (PK-like) 386 662 IPR011009 -
Apr9g0260 696 PANTHER ADENINE NUCLEOTIDE ALPHA HYDROLASE-LIKE DOMAIN KINASE 9 696 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g0260 Apr-Chr9 3416069 3419984 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g0260 83 684 Receptor kinase-like Gene Family AT5G12000 59.713 0.0 714
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Apr9g0260 PK_Tyr_Ser-Thr 5.5e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g0260 - - gmx:100786386 947.192
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g0260 9 3416069 3419984 Apr9g0260 9 3416069 3419984 ECH