Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g0244 ATGGGGAAGTTGGGTCTTAGTTGCATCCGCATGGCACTCTCAGACTTGTATGCTTCACAGCGTTATTATAAAACTAGGCTCATTCTCAATGTCAAGGATTCCATGGCAGAGGTGATTGAAGCTGCTTCAGTAGGTTTGGATTTGATAGAAAATGGGAAGGTCAAAGCCATCATAGGGCCCCAAATTTCGAAGCAGGCCAACATTCTTATTGATGTGGGACTCAAATATCAGGTTCCTATTATATCATTTTCAGCTACCAGCCCTTCTCTAAGTAGCCCTCAAAGACGAAGTCCTTATTTTTTTCGAGTGGCACAGAATGATGCAGCTCAAGTAAAAGCCATCTCAGCAATTGTTCAAGCTTTTGGATGGAAGCAAGTGGTTCCCATATACTCACAAGGCATATATGAGGAGGAACTAATACCTTATATGACTAGAGCATTACTAGAGGCAAATGTATCTACTCCTTATCAAAGTGCAATCTTCCCTTTAGCAACCAACCAACAGATTCTCCAAGAGCTTCATAAATTGAAAATGATGTCCAATAGAATCTTTATTGTGCATGTGTCACTTAAATTGGGTTGTCGTTTGTTCACAATGGCAAGAAACATGGGAATGATGAAGCAAGGCTATGTTTGGATCATGACCACAAGGATGAGTAATCTTTTAACCTTGAAGAATTCTTCAATTATTGATTCAATGCAAGGGGTCTTAGGTGTGAGTAGCTACTTTCCAAAGACAAAAGAGCTTGAAGATTTTGATGCTAGGTGGAAGAAAAAATTTCAACAAGAATATCCTAGCATCGTTGACACTCAAATAAATGTTTTGGGTCTATGGGCCTATGATGCTGCAACAGCACTAGCTATAGCGATTGAGAAAGTTGTGCTCACAAATATGAGATTCCAAAATACAAATGCTTCAAACAATGCAACAAAATTTGGAGATATGAGGCTCTCTCAAATTGGTCCAAAACTTAGGGAAGCGTTACCCACGATCAGATTTCAAGGCCTTGTAGGGGAGTTCAGTTTTGTCAATGGAGAAGTAAATTTATCATCTTTTCAGATAATTAACATCAATGGTGATGGGAAAAGAGTGGTTGGATATTGGACACCACAAAATGCACTACAAAGAAATATGGATTCCACAAGCATGGGTGCTTATTCTATCTCTAAGACCAATCTAGGACCAATTATTTGGCCAGGGGATTCTTCCTCTACCCCTATAGGCTGGGATGAATATGAATTAGCCAACACCAATTATTTGAGGGTAGGAGTTCCCTTTGATCAATATAAAAGGTTCATTGATAAAAAAGGTGACCAATATAATAACACATTTGTTCTTGTGGGTAGCTACAGCATTGATGTTTTCAACTACGTAATAGGGACGTTACCGTACAAGGTTCCTTACGAATTTGTCTATTTTGCCAACTATTATGACCCTTTCCACCCAGGTTTAATCTACGATAACTTGATCAAGCAAACTTATCTTGGGAAATATGATGTGGTGGTAGGAGATATAATGATCAAGGCTAATTGGTCCATATATGTGGACTTCACATTGCCGTTTACCGAGAGTGGTGCAACTTTTATAGTGCCAACAACAAAACTAAGTAACAAGACAAAGGCTTGGATTTTCTTGAAGCCCTTGACATGGGAACTATGGCTCACAACCGGTTGCTTCTTTGTGTTCATTGGCTTTGTGGTTTGGGTGCTCGAACACCATGCCAATGAAGATTTCAGAGGATCTCCCTCCCATCAAGTCAGCACTAGCTTTTGGTTTTCCTTCTCAACATTAGTTTTTGCACAGAGGGAGAGGGTCCAGAGCAACTTGGCTAGGTTTGTGGTGATCATATGGATTTTTGTAGTGCTTATACTAACACAGAGTTACACAGCTAATTTGGCCACGTTAATGACAGTTCAACAGCTAAGACCAACTGTGACAGATGTGAGTCAGCTACTACAGAATGGGGACTTTGTAGGATATCGATATGGGTCTTATTATACTTACGAATCTTTAATACAAATGGGCTTTGATAATAGCAAGCTTAAGTTGTATAGTACTGCAGAAGAATGTGATCAACTTCTAACTTTGGGAAGCCCAAATGGAGGCATTAGTGCTGCTTTTGATGAAATCCCATACATAAAGGTTATTCTATCAGGTTACTGCTCCAAATATACCACCATTGGACCAACATACAAAACTGAAGGGCCAGGCTTTGGTTTTGCATTCAGAAGAGGTTCCCCTTTGGTAGCAGATGTTTCAAGAGCTATCTTAAATTTAACACAGAATAATCAAGATACCATGAAAGCAATTGAAGATAGATGGTTCAAGAACGAAACCCATTGTATACAACCCTCTGAAGAGGATAGTTCCTACAAACTTGACCTTGAAAGTTTCCAAGGACTATTTCTCGTTGCGGGTTTGGCTTCATCATTTGCCCTTATAGTACACTATTCTATGATACTTCGTGGCCACAGGAGGGTCTTCATTCAGTTTGATTCAAATGAATCATTTTGCAAAAAAATCTATACCATGTTTAGAATCTACTTTCAAAAAGATGCCAGAATTGTTCCTGATAAAGATATATGGATGCCTGAAGTGAATTACGTAGCCCCACCAAATCCACCAAGGAATTTAGAACCATATGCTTGA 2649 0.3926 MGKLGLSCIRMALSDLYASQRYYKTRLILNVKDSMAEVIEAASVGLDLIENGKVKAIIGPQISKQANILIDVGLKYQVPIISFSATSPSLSSPQRRSPYFFRVAQNDAAQVKAISAIVQAFGWKQVVPIYSQGIYEEELIPYMTRALLEANVSTPYQSAIFPLATNQQILQELHKLKMMSNRIFIVHVSLKLGCRLFTMARNMGMMKQGYVWIMTTRMSNLLTLKNSSIIDSMQGVLGVSSYFPKTKELEDFDARWKKKFQQEYPSIVDTQINVLGLWAYDAATALAIAIEKVVLTNMRFQNTNASNNATKFGDMRLSQIGPKLREALPTIRFQGLVGEFSFVNGEVNLSSFQIININGDGKRVVGYWTPQNALQRNMDSTSMGAYSISKTNLGPIIWPGDSSSTPIGWDEYELANTNYLRVGVPFDQYKRFIDKKGDQYNNTFVLVGSYSIDVFNYVIGTLPYKVPYEFVYFANYYDPFHPGLIYDNLIKQTYLGKYDVVVGDIMIKANWSIYVDFTLPFTESGATFIVPTTKLSNKTKAWIFLKPLTWELWLTTGCFFVFIGFVVWVLEHHANEDFRGSPSHQVSTSFWFSFSTLVFAQRERVQSNLARFVVIIWIFVVLILTQSYTANLATLMTVQQLRPTVTDVSQLLQNGDFVGYRYGSYYTYESLIQMGFDNSKLKLYSTAEECDQLLTLGSPNGGISAAFDEIPYIKVILSGYCSKYTTIGPTYKTEGPGFGFAFRRGSPLVADVSRAILNLTQNNQDTMKAIEDRWFKNETHCIQPSEEDSSYKLDLESFQGLFLVAGLASSFALIVHYSMILRGHRRVFIQFDSNESFCKKIYTMFRIYFQKDARIVPDKDIWMPEVNYVAPPNPPRNLEPYA* 883
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g0244 882 SUPERFAMILY Periplasmic binding protein-like II 413 777 - -
Apr9g0244 882 Gene3D - 414 541 - -
Apr9g0244 882 PIRSF IGluLR_plant 1 860 IPR017103 -
Apr9g0244 882 Gene3D - 723 783 - -
Apr9g0244 882 Gene3D - 7 350 - -
Apr9g0244 882 Gene3D - 542 670 - -
Apr9g0244 882 SUPERFAMILY Voltage-gated potassium channels 551 637 - -
Apr9g0244 882 CDD GluR_Plant 420 775 - -
Apr9g0244 882 Gene3D - 106 372 - -
Apr9g0244 882 PANTHER GLUTAMATE RECEPTOR 2.9 2 850 - -
Apr9g0244 882 Pfam Ligand-gated ion channel 777 808 IPR001320 GO:0015276|GO:0016020
Apr9g0244 882 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 2 850 - -
Apr9g0244 882 CDD PBP1_GABAb_receptor_plant 1 378 IPR044440 -
Apr9g0244 882 Pfam Receptor family ligand binding region 8 359 IPR001828 -
Apr9g0244 882 SUPERFAMILY Periplasmic binding protein-like I 7 400 IPR028082 -
Apr9g0244 882 Pfam Bacterial extracellular solute-binding proteins, family 3 486 776 IPR001638 -
Apr9g0244 882 SMART GluR_14 419 777 IPR001320 GO:0015276|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g0244 Apr-Chr9 3157542 3161660 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g0244 3 854 Ion Channels AT2G29120 45.497 0.0 723
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g0244 K05387 - jre:108992307 876.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g0244 9 3157542 3161660 Apr9g0244 9 3157542 3161660 ECH