Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g0214 ATGGCTAACTGTCACCGGAACAACGTCGGAAACCTTGTTCTCGGCCACCACCCTACTAAGAACGAAACCGTTGCTGGCCACTTCCGCCTATGGAACTCCCTCTCCGCCTCCTCCCTCCGCCGCCTCATCTTCGACGCTGTCAGCTGCGGCGCCAGTTCCCGATACCACCACCGCCGTCACCAAGACGACGACGACGACGAGTCGACGGCGATTTCGGACGCCTCCGAGGAGAAACGGCAGCAGCATAAGGCGAAGGCGAATGCGAGGTCGGAGAAGCTTTCGGATCTGCTGAACATGGCGGAGATTGAAGCGGACGCTGAGACGAAGAAGAAGGAGGAGAAGCTGGAGGAGCTGAAGCGTGTGGTGAAGGAGTTGCAGGAGGAAGAGGATTTGACAAAGCGAAGAGAAGCTGCGGCGACAGTGAGGTTGGTGGCGAAGGAGGATTTGGATGTTAGAGGAACGCTTGCAATGCTCGGAGCCATTCCTCCTCTCGTCTCAATGCTCGATTCCCAAGAGCCAGATTCTCTTGTCGCTTCGCTCTACGCGTTGCTCAACCTCGGAATCGGAAACGATGCGAACAAAGCAGCCATTGTCAAAGTTGGCTCTGTTGAGAAGATGCTGAAGCTCATTGAATCTCCAGATGATGTAAATTCTTCGGTGTCTGAAGCAATTGTTGCAAATTTCCTTGGACTGAGTGCTTTAGATTCCAACAAACCCATAATTGGGTCCTCTGCTGCAATTCCATTCCTAGTTAGAACCCTTCAGAGTTTAGATAATAAAAGTAGCTCCCAAGCTAAGCAAGATGCTCTTAGAGCACTGTACAATCTTTCAATCTTCCCAGCAAATATTTCATTCATTTTGGAAACCAATTTGGTCCCATTTCTTATAAACTCGGTAGGAGACATGGAAGTAACTGAAAGAAACCTTGCAATCCTCAGCAATTTGGTATCGACCCGAGAGGGTAGAAAAGCGATCAGTGCTGTGCCGGATGCGTTTCCTATCTTGGTGGATGTATTGAATTGGACAGATTCATCAGAATGCCAGGAAAAGGCATCGTACATTTTGATGGTTATGGCACACAAATCCTATGGTAACAAGCAGGCCATGATTGAAGCCGGGATTGTGTCATCACTGCTTGAGTTGTCGCTTTTGGGTACCACATTGGCTCAGAAAAGGGCCTCAAGGATATTGGAAATTTTGAGGGTGGACAAAGGGAAGCAGGTATCTGGGAGCTACGGTGGAAACCTAGTTGCAACTGTCTCTGCTCCTATTTGTGGATCTTCGTCATCTTGTGCCAAACTAGATGGAGGAGGAAAAGAGTGTTCTGAGGAGGAGGAAGATATGATGAGTGAGGAGAAGAAAGCAGTGAAGCAATTAGTCCAGCAGAGTTTGCAAAACAACATGAGGAAAATTGTAAAGAGGGCCAACTTGCCTCAAGATATCGTTCCTTCTGATCATTTTAAGTCGCTCACTTCAAGTTCGACATCAAAGAGCCTGCCATTTTGA 1506 0.4847 MANCHRNNVGNLVLGHHPTKNETVAGHFRLWNSLSASSLRRLIFDAVSCGASSRYHHRRHQDDDDDESTAISDASEEKRQQHKAKANARSEKLSDLLNMAEIEADAETKKKEEKLEELKRVVKELQEEEDLTKRREAAATVRLVAKEDLDVRGTLAMLGAIPPLVSMLDSQEPDSLVASLYALLNLGIGNDANKAAIVKVGSVEKMLKLIESPDDVNSSVSEAIVANFLGLSALDSNKPIIGSSAAIPFLVRTLQSLDNKSSSQAKQDALRALYNLSIFPANISFILETNLVPFLINSVGDMEVTERNLAILSNLVSTREGRKAISAVPDAFPILVDVLNWTDSSECQEKASYILMVMAHKSYGNKQAMIEAGIVSSLLELSLLGTTLAQKRASRILEILRVDKGKQVSGSYGGNLVATVSAPICGSSSSCAKLDGGGKECSEEEEDMMSEEKKAVKQLVQQSLQNNMRKIVKRANLPQDIVPSDHFKSLTSSSTSKSLPF* 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g0214 501 Gene3D - 83 260 IPR011989 -
Apr9g0214 501 SMART arm_5 148 188 IPR000225 GO:0005515
Apr9g0214 501 SMART arm_5 190 233 IPR000225 GO:0005515
Apr9g0214 501 SMART arm_5 361 402 IPR000225 GO:0005515
Apr9g0214 501 SMART arm_5 279 317 IPR000225 GO:0005515
Apr9g0214 501 SMART arm_5 234 278 IPR000225 GO:0005515
Apr9g0214 501 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 159 201 IPR000225 GO:0005515
Apr9g0214 501 MobiDBLite consensus disorder prediction 55 90 - -
Apr9g0214 501 MobiDBLite consensus disorder prediction 53 90 - -
Apr9g0214 501 Coils Coil 442 462 - -
Apr9g0214 501 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 1 501 - -
Apr9g0214 501 Gene3D - 261 410 IPR011989 -
Apr9g0214 501 Coils Coil 71 135 - -
Apr9g0214 501 SUPERFAMILY ARM repeat 117 387 IPR016024 -
Apr9g0214 501 PANTHER ARMADILLO/BETA-CATENIN-LIKE REPEAT PROTEIN 1 501 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g0214 Apr-Chr9 2804344 2807359 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g0214 115 407 U-box Gene Family AT1G67530 31.333 1.97e-33 132
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g0214 - - mtr:MTR_1g014420 662.144
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g0214 9 2804344 2807359 Apr5g1305 5 17375552 17377214 PCT