Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g0213 ATGAGTAGCTTGGTTGAGAGGCTTCGTGTAAGATCTAATCGCAAACCAATTTATACTATAAATGAGTCAGATGATGATTCTGAGATGTTGCCTAGAAAACATGATAAACCTCAGGAAAAATTTGAGAGAATAGCTAGAAGTGATGCAAAAGAAAATTCATGTCAAGCTTGTGGAGAAAATGGAAATCTTTTGATCTGTGAAACATGCACTTATGCTTTTCATCCTAGCTGTTTACTCTCCCCACTTAAAAGACCTTTTCCAGACAACTGGAGGTGCCCGGAATGTGTTAGCCCGCTTAATGATATTGACAAGATATTAGATTGTGAGGTGAGTCCCACAGTAGCTGGTGCAAGTGATGTCACAAAATTGGAGTCAAAGCAAAACTTTGTGAAACAGTATCTTGTTAAGTGGAAGGGACTATCATATTTGCACTGCACATGGGTGCCAAAGGAAGAGTTTCTGAAAGCTTTCAAGAGTTATCCACATATAAAAACCAAAGTAAACAACTTTCATCGTCATATGGCATCACGTGATGAAGATTTTGTTGCCATTCGACCTGAGTGGACTATGGTTGATCGCATACTTGCTTGCAGGGGTGCTGATGATAAGAAGGAATATCTTGTGAAGTGGAAAGAGCTTCCATATGATGAATGCTACTGGGAGCTTGAGTCAGATATCTCTGCATTTCAGTCAGAAATAGAAAGATTCAATGTATTTCAGTTGAGGTCCAGGAAAATTTTTTCTGGAAAACAAAAAAGTGGTGTTAAGGGTGGGGCTAAATTGAATAAACAGAAGAAAGAATTTCAACAGTACGAACATAGCCCTCAGTTTCTTTCAGGGGGTACACTGCATTCATATCAACTTGAAGGATTGAACTTCCTACGATACTCTTGGTCTAAGCAAACCCATGTTATACTTGCTGATGAAATGGGACTTGGAAAAACCATACAAAGTATTGCTTTCTTAGCATCCCTTTTTGAAGAGGATGTTTCTCCACATCTGGTGGTTGCTCCACTTTCAACTTTGCGAAACTGGGAACGAGAATTTGCTACTTGGGCACCTCAAATGAATGTTGTCATGTATTTTGGATCTTCCCAAGCTCGTGCTTGTATTAGAGAGTATGAATTCTATTTTCCAAAAAATCAGACGATAAAAAAAAAGAGATCTAGACAGATAGTTAGTGGAAGCAAAGAAGAAAGGATAAAATTTGATATCCTGTTGACATCATATGAGATGATAAATTTTGATACAGCATCATTGAAACGAATAAAATGGGAATGCATGATAGTTGATGAGGGTCACCGTCTTAAAAACAAGGATTCTAAATTATTTTCTTCATTGATGCAATATTCTAGCAGACATCGTGTGCTTTTGACAGGAACTCCGCTTCAGAACAATCTGGATGAACTTTTTATGCTTATGCACTTCCTTGATGCTGGGAAGTTTGGAAGTTTAGAGAAGTTCCAGGAAGAGTTTAAGGACATCAATCAAGAGGAGCAGATTTTGAGACTTCATAACATGTTGGCACCGCATCTCCTGCGAAGAATGAAGAAAGATGTCATGACGAAACTGCCTCCTAAAAAGGAACTTATTTTACGTGTTGAATTAAGTAGCAAACAGAAAACATACTATAAGGCAATTTTGACCCGTAATTATCAGATATTAACTCGCCGAGGTGGGGCACAAATTTCTCTAATCAATGTTGTTATGGAACTGCGCAAGCTCTGTTGTCATCCCTACATGTTACAAGGAGTTCAACCTAATCTTGATGATGAAAAAGAATCATACAAGCAGCTGCTGGAATCATCTGGGAAGTTGCAGTTGTTGGACAAGATGATGGTGAAGCTTAAAGAGCAAGGACATAGAGTCCTGATATATTCCCAATTTCAGCACATGCTTGATTTGCTTGAAGATTATTGTTCTTATAAGCACTGGCTGTATGAAAGGATAGATGGCAAAGTTGGTGGAGCTGAAAGACAAGTACGCATAGATCGGTTCAATGCTAAAAATTCTTCAAGATTTTGTTTTCTTCTTTCTACTAGAGCTGGGGGATTGGGGATAAACCTTACAACAGCTGACACAGTTATCCTATATGACAGTGATTGGAATCCTCATGCTGATTTGCAAGCCATGGCCAGAGCTCATCGACTTGGACAAATTAACAAGGTGATGATTTATAGGCTTATAACAAGAGGAACAATTGAAGAAAGGATGATACAGATGACAAAGCAGAAAATGGTTTTAGAACACCTAGTTGTAGGGAGGCTAAAGGCTCAAAATATTAACCAGGAAGAGTTAGATGATATTATAAGGTATGGCTCAGAAGAGCTATTTGCTGATGAAAATGATGAAGTGGGAAAATCTCGCCAAATTCATTATGATGCTGCTGCTATAGACAGATTGCTGGATCGTGATCAAGTTGGAGATGAAGATGCTACTTTGGATGATGAAGATGAAGATGGATTTCTGAAGGCCTTTAAGGTGGCAAATTTTAAATATATTGATGAAGTTGAGAGTGCAGAGGAGGGGGCACAAAAAAGAGCAAAGGAGAATCAATCATATGAGAGCAATTCCGAAAGAACAAATTACTGGGAAGAGTTGTTAAGAGACAGATACGAAGAACATAGACTTGAAGAGTGTAATGCCTTTGGCAAAGGGAAGCGGAACCGCAACAAATTACCGATGGTTTCTTATGAGGAGGATGGTTTTAATGGTTTGGAAGACATGAGCTCTGATGATGAAGAGGACAAATATGAAGAGGATCTTACGAGTGATGACTCAAAATCAACTGGAACTACTACTACTACTAGAAGACCTCTCAAAAAGAAAGCTAGAGCAGATAGCACAGAGCCACTTCCTTTAATGGAAGGTGAAGGGAAATCTCTCAAAGTACTTGGTTTTAATCAAAATCAAAGAGCTGCTTTTGTTCAAATTTTGATGAGGTTTGGGGTTGGTGATTTTGATTGGAAAGCGTTTACTTCCTGCATGAAACAGAAGACTTATGAAGAAATCAAAGAGTATGGAACACTTTTCTTGTCTCATATTGCTGAAGATATAACTGATTCCCCTACATTTGCAGATGGTGTTCCAAAAGAAGGACTTCGAATACCAGATGTACTTGTAAGGATTGCTGTTCTGCTCTTGATAAGGGAAAAAGTGAAGTTTGCATCAGAAAATTCTCAGACTCCACTTTTTTCAGATGACATCTTAATACGCTATGCAGGTTTGAAGGGTGCAAATATATGGAAGGAGGAGCATGATTTAATTTTACTGCATGCTGTGTTGAAGCATGGCTATGGAAGGTGGCATGCCATGGTTGATGATAAGGATCTGAAGATTCAGAAGGTTATCTGTCAGGAGTTGAATCTCCCCTATATAAATTTACCAGTTCAAGGACAATCAAATGACATAGCAGCTCATGGTGCAAATATGGAAAATGTGAAATTGACATGCAACCAATCTAGGGAGAGTGGCAGGAGGAGTGACATGGAAGCTGATGGTGCACACGGTTCTGGTGATGCTAGGAACCAAGCACAGTTAAATCCTGAGTCCTCCACATTGTATCAGTTTAAAGATATACAAAGAAGACAGATTGAGTTTATAAAAAAAAGGATACTCCTATTGGAAAAAGGTCTCAATGCTGAGTACCAGAAAAAATACTTTGGTGATTTGAAATCAATTGAGGTGGCAAATGAAGAATTTAAAGGTAAACCAATGGTTACAAATGTACCAAGTTATACATTTGGGGAGACTGGTACGCAAATGATTGATCAAGTGCCTCAAGTCAAAGCAATAGGTTCAGAAGAAATTTCTGTTTCTGCATGTAATAATGATCCACATCGATTGGAATTAGTTCATCTTTACAATGAGATGTGCAAGACTATGGAGGAAAACACCATAGATTTAAATCGAACACCTTTGACAAGTGAATTGACAGAAGTCACTGTTATTAAGAACTTGCATCAACTAGAAATCATTTGTGAAGATGTCAACAGAATTCTAAATCAACAAAATCAACCTTCTGAAGTGCCTATGCTAAATTCTGACAACAAATCGGATATTTTATCAGAGACTGGAGTTGTGGGCTTTGAATTGCTTTCTACTCCTCAAGATGAATGCAAACCTAAACATGTGGAAATGGAATCTGAACCTAAAAAAGAAAACAAGCAGGTCCAGCCTCGTACAAGAGATGTATAA 4197 0.3824 MSSLVERLRVRSNRKPIYTINESDDDSEMLPRKHDKPQEKFERIARSDAKENSCQACGENGNLLICETCTYAFHPSCLLSPLKRPFPDNWRCPECVSPLNDIDKILDCEVSPTVAGASDVTKLESKQNFVKQYLVKWKGLSYLHCTWVPKEEFLKAFKSYPHIKTKVNNFHRHMASRDEDFVAIRPEWTMVDRILACRGADDKKEYLVKWKELPYDECYWELESDISAFQSEIERFNVFQLRSRKIFSGKQKSGVKGGAKLNKQKKEFQQYEHSPQFLSGGTLHSYQLEGLNFLRYSWSKQTHVILADEMGLGKTIQSIAFLASLFEEDVSPHLVVAPLSTLRNWEREFATWAPQMNVVMYFGSSQARACIREYEFYFPKNQTIKKKRSRQIVSGSKEERIKFDILLTSYEMINFDTASLKRIKWECMIVDEGHRLKNKDSKLFSSLMQYSSRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEKFQEEFKDINQEEQILRLHNMLAPHLLRRMKKDVMTKLPPKKELILRVELSSKQKTYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLQGVQPNLDDEKESYKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYCSYKHWLYERIDGKVGGAERQVRIDRFNAKNSSRFCFLLSTRAGGLGINLTTADTVILYDSDWNPHADLQAMARAHRLGQINKVMIYRLITRGTIEERMIQMTKQKMVLEHLVVGRLKAQNINQEELDDIIRYGSEELFADENDEVGKSRQIHYDAAAIDRLLDRDQVGDEDATLDDEDEDGFLKAFKVANFKYIDEVESAEEGAQKRAKENQSYESNSERTNYWEELLRDRYEEHRLEECNAFGKGKRNRNKLPMVSYEEDGFNGLEDMSSDDEEDKYEEDLTSDDSKSTGTTTTTRRPLKKKARADSTEPLPLMEGEGKSLKVLGFNQNQRAAFVQILMRFGVGDFDWKAFTSCMKQKTYEEIKEYGTLFLSHIAEDITDSPTFADGVPKEGLRIPDVLVRIAVLLLIREKVKFASENSQTPLFSDDILIRYAGLKGANIWKEEHDLILLHAVLKHGYGRWHAMVDDKDLKIQKVICQELNLPYINLPVQGQSNDIAAHGANMENVKLTCNQSRESGRRSDMEADGAHGSGDARNQAQLNPESSTLYQFKDIQRRQIEFIKKRILLLEKGLNAEYQKKYFGDLKSIEVANEEFKGKPMVTNVPSYTFGETGTQMIDQVPQVKAIGSEEISVSACNNDPHRLELVHLYNEMCKTMEENTIDLNRTPLTSELTEVTVIKNLHQLEIICEDVNRILNQQNQPSEVPMLNSDNKSDILSETGVVGFELLSTPQDECKPKHVEMESEPKKENKQVQPRTRDV* 1399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g0213 1398 Gene3D - 525 749 IPR027417 -
Apr9g0213 1398 Pfam CHD subfamily II, DUF1087 839 901 IPR009463 -
Apr9g0213 1398 Pfam PHD-finger 54 96 IPR019787 -
Apr9g0213 1398 Gene3D - 98 186 - -
Apr9g0213 1398 Gene3D - 1037 1205 - -
Apr9g0213 1398 ProSiteProfiles Chromo and chromo shadow domain profile. 100 182 IPR000953 -
Apr9g0213 1398 MobiDBLite consensus disorder prediction 1155 1169 - -
Apr9g0213 1398 Pfam Chromo (CHRromatin Organisation MOdifier) domain 190 237 IPR023780 -
Apr9g0213 1398 Pfam Chromo (CHRromatin Organisation MOdifier) domain 103 157 IPR023780 -
Apr9g0213 1398 ProSiteProfiles Zinc finger PHD-type profile. 51 98 IPR019787 -
Apr9g0213 1398 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 295 480 IPR014001 -
Apr9g0213 1398 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 517 776 IPR027417 -
Apr9g0213 1398 PANTHER CHD3-TYPE CHROMATIN-REMODELING FACTOR PICKLE 5 1056 - -
Apr9g0213 1398 MobiDBLite consensus disorder prediction 1153 1181 - -
Apr9g0213 1398 SUPERFAMILY Chromo domain-like 66 177 IPR016197 -
Apr9g0213 1398 CDD CD2_tandem 187 236 - -
Apr9g0213 1398 Gene3D - 275 524 IPR038718 -
Apr9g0213 1398 SMART helicmild6 634 718 IPR001650 -
Apr9g0213 1398 SMART chromo_7 99 168 IPR000953 -
Apr9g0213 1398 SMART chromo_7 187 241 IPR000953 -
Apr9g0213 1398 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 274 515 IPR027417 -
Apr9g0213 1398 MobiDBLite consensus disorder prediction 1371 1398 - -
Apr9g0213 1398 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 5 1056 - -
Apr9g0213 1398 CDD CD1_tandem 98 172 - -
Apr9g0213 1398 MobiDBLite consensus disorder prediction 840 860 - -
Apr9g0213 1398 Pfam CHD subfamily II, SANT-like domain 934 1067 IPR009462 GO:0003677|GO:0006338
Apr9g0213 1398 SUPERFAMILY Chromo domain-like 178 237 IPR016197 -
Apr9g0213 1398 MobiDBLite consensus disorder prediction 840 854 - -
Apr9g0213 1398 Gene3D - 187 237 - -
Apr9g0213 1398 ProSiteProfiles Chromo and chromo shadow domain profile. 189 236 IPR000953 -
Apr9g0213 1398 CDD SF2_C_SNF 603 729 - -
Apr9g0213 1398 ProSitePatterns Zinc finger PHD-type signature. 54 95 IPR019786 -
Apr9g0213 1398 Pfam SNF2-related domain 303 582 IPR000330 GO:0005524|GO:0140658
Apr9g0213 1398 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 44 97 IPR013083 -
Apr9g0213 1398 MobiDBLite consensus disorder prediction 19 38 - -
Apr9g0213 1398 SMART PHD_3 53 96 IPR001965 -
Apr9g0213 1398 Pfam Helicase conserved C-terminal domain 605 718 IPR001650 -
Apr9g0213 1398 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 608 769 IPR001650 -
Apr9g0213 1398 SMART DUF1087_2 838 905 IPR009463 -
Apr9g0213 1398 MobiDBLite consensus disorder prediction 905 921 - -
Apr9g0213 1398 SMART DUF1086_2 915 1070 IPR009462 GO:0003677|GO:0006338
Apr9g0213 1398 MobiDBLite consensus disorder prediction 900 955 - -
Apr9g0213 1398 SMART ultradead3 279 491 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g0213 Apr-Chr9 2765090 2790373 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g0213 305 769 RAD5 or RAD16-like Gene Family AT1G02670 23.978 5.84e-30 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Apr9g0213 SNF2_N 2.7e-64 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g0213 K11643 - gmx:100804203 2110.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g0213 9 2765090 2790373 Apr5g1302 5 17332100 17352543 PCT