Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g0209 ATGGAAGGACTAAGCAAGGAGCCATACCTTTGTGACAGATCAAGCATCATGCTCTCTTCTATTCCAGAGGCTCCTCCAAGTCCAAGTACCCCACTTCAGAATCCACATGAAAAGAAACAACAATCTCTCGAGGAAGAAGAGGAAGAAAAGGAGACAAAGCACAATACCCTATTGGATCTGAATGTTTCTGGTGATGATTACACTCTTGGTTGTAGTCCACAAGGACTAGAACTCAACCTCATCACTTGTTTAGACATGGGATCATCATCATCTAATGCTAATTCATCAGAAACCCCTCTCGGTGGATCTGATGCTGAGCCAAGAGTGTTCTCTTGCAACTACTGCCATAGAAAATTCTACAGTTCACAAGCTCTAGGGGGCCACCAAAATGCACACAAGAGAGAAAGGTCCATAGCAAAAAGAGGGCACAGGTTTGGAACACAGTTAATGGCTTCAGCAGCAGCTTTTGGCCTTCCCTTTGTGCATAACAATCGCTTTGCAAGCATGGCTTCTCTCCCCCTTTATGGTGCTTGCAACAATAGATCTCTTGGGATTCAAGCACACTCCATGATCCACAAGCCTTCTCATGTTAATGGGTTTGGAAGCTCTTATGGATACCATCATCATGGTTGGTCAAGACCCATTATTGATCATCAACCTGGCATAGCAAAGCTAGCTGGTGTGGCAGATTTTCACAGGACAAAATCAACATTGTCATCACCATCACAAAACAGTGTTGGCAGGTTTGAAGTGGTTAGTCCTATGATTAATTCTGCAGCCAATAAAGATATCAGTGGATATGTGGTTGTTAGTGGTGGAACTCGGGTGAAGAGTACTAATAATCAAGATGAAATGAAGCACCTTGATTTATCCCTCAAGCTCTGA 885 0.4339 MEGLSKEPYLCDRSSIMLSSIPEAPPSPSTPLQNPHEKKQQSLEEEEEEKETKHNTLLDLNVSGDDYTLGCSPQGLELNLITCLDMGSSSSNANSSETPLGGSDAEPRVFSCNYCHRKFYSSQALGGHQNAHKRERSIAKRGHRFGTQLMASAAAFGLPFVHNNRFASMASLPLYGACNNRSLGIQAHSMIHKPSHVNGFGSSYGYHHHGWSRPIIDHQPGIAKLAGVADFHRTKSTLSSPSQNSVGRFEVVSPMINSAANKDISGYVVVSGGTRVKSTNNQDEMKHLDLSLKL* 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g0209 294 Gene3D Classic Zinc Finger 90 155 - -
Apr9g0209 294 ProSitePatterns Zinc finger C2H2 type domain signature. 112 132 IPR013087 -
Apr9g0209 294 MobiDBLite consensus disorder prediction 1 58 - -
Apr9g0209 294 MobiDBLite consensus disorder prediction 38 56 - -
Apr9g0209 294 Coils Coil 36 56 - -
Apr9g0209 294 ProSiteProfiles Zinc finger C2H2 type domain profile. 110 137 IPR013087 -
Apr9g0209 294 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 294 - -
Apr9g0209 294 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 1 294 IPR044246 GO:0009788
Apr9g0209 294 SUPERFAMILY beta-beta-alpha zinc fingers 107 137 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g0209 Apr-Chr9 2703220 2704466 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g0209 1 294 C2H2 Transcription Factor Family AT5G10970 38.538 1.01e-50 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Apr9g0209 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g0209 - - gmx:100809569 356.295
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g0209 9 2703220 2704466 Apr5g1300 5 17308873 17309694 PCT