Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g0200 ATGGCTTACCACAACCAACACCTCTCCCAACAAGACAACCCACTTCACTATTTCCCACACCACTCCCTCCGTTCCGTATTACCAGACCAACAACAGCTACCCTCCTCACCCGACCCTACCTCCAAACCTCCCTCCGATCCACACCCTCTCCAAACCGCACCCAATTGGCTCAACGACGCGCTCCTTCGCCCTCACTACACTGACAACACCACCAACAACAACGACAACGACAACAACAACAACGTTAACAACAACGGCTCCAATTTCCTAAACCTCCACTCCACCTCCTCGGCCCAATGGCTGGCCCGCCCAATCCTCCCCCGCAACCGTAGCGAGGTCATCGACGACGTCGCTGCCACCGCCGGCGACTCCCTTATCGCCGGCGGCGAATCCTCGGATTTGAAGGAAGGGAAAGGAGAGGGTGACGGGGTGAACTTGCAGATAGGGAGGTGGAAGGCGGAGATTCTGGCGCATCCGATGTACGAACAGTTGCTGTCGGCACACGTGGCGTGCTTGCGGATCGCCACGCCAGTGGACCAGTTGCCGAGGATCGATGCTCAGTTAGCACAGTCTCAGAATGTGGTCGCTAAGTATTCCGCGTTCGGACACGCTGCTCAGAACATGCTCGGAGATGACAAAGACCTTGACCATTTCATGTCGCACTATGTTTTGTTGCTTTGTTCCTTCAAAGAACAATTGCAGCAACATGTACGGGTCCATGCAATGGAAGCAGTAATGGCTTGTTGGGAGATAGAGCAATCCTTACAAAGTCTAACAGGAGTTTCACCTGGAGAAGGTACTGGAGCAACTATGTCTGAAGATGAAGATGACCAAGTAGATAGTGATGCCAATCTCTTTGATAATAGTTTGGACGGGCCAGATAGCATGGGATTTGGCCCTCTTGTTCCTACAGAGAACGAAAGGTCCCTTATGGAGCGTGTAAGACTAGAATTAAAGCATGAATTAAAACAGGGTTATAAGGAGAAAATTGTGGACATCCGAGAGGAAATTTTACGCAAGAGACGGGCTGGGAAACTTCCTGGTGACACAACCTCTGTTCTTAAAGCTTGGTGGCAATCACATTCCAAGTGGCCTTACCCTACGGAGGAAGATAAGGCAAGGTTGGTTCAGGAAACTGGATTGCAATTGAAGCAGATTAATAATTGGTTTATCAATCAACGGAAGAGGAATTGGCACAGCAATCCTTCAACTTCTACTGTCTTGAAGAGCAAGCGCAAAAGTAATGCAGGTGATAACATGTGA 1263 0.5012 MAYHNQHLSQQDNPLHYFPHHSLRSVLPDQQQLPSSPDPTSKPPSDPHPLQTAPNWLNDALLRPHYTDNTTNNNDNDNNNNVNNNGSNFLNLHSTSSAQWLARPILPRNRSEVIDDVAATAGDSLIAGGESSDLKEGKGEGDGVNLQIGRWKAEILAHPMYEQLLSAHVACLRIATPVDQLPRIDAQLAQSQNVVAKYSAFGHAAQNMLGDDKDLDHFMSHYVLLLCSFKEQLQQHVRVHAMEAVMACWEIEQSLQSLTGVSPGEGTGATMSEDEDDQVDSDANLFDNSLDGPDSMGFGPLVPTENERSLMERVRLELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTSVLKAWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPSTSTVLKSKRKSNAGDNM* 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g0200 420 MobiDBLite consensus disorder prediction 64 90 - -
Apr9g0200 420 MobiDBLite consensus disorder prediction 29 90 - -
Apr9g0200 420 MobiDBLite consensus disorder prediction 1 20 - -
Apr9g0200 420 Pfam ELK domain 317 338 IPR005539 GO:0003677
Apr9g0200 420 MobiDBLite consensus disorder prediction 1 16 - -
Apr9g0200 420 SUPERFAMILY Homeodomain-like 339 402 IPR009057 -
Apr9g0200 420 Pfam Homeobox KN domain 357 396 IPR008422 GO:0003677|GO:0006355
Apr9g0200 420 ProSiteProfiles 'Homeobox' domain profile. 337 400 IPR001356 GO:0003677
Apr9g0200 420 SMART ELK_2 317 338 IPR005539 GO:0003677
Apr9g0200 420 MobiDBLite consensus disorder prediction 400 420 - -
Apr9g0200 420 Gene3D - 338 399 - -
Apr9g0200 420 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 41 414 - -
Apr9g0200 420 SMART HOX_1 339 404 IPR001356 GO:0003677
Apr9g0200 420 Pfam KNOX2 domain 209 259 IPR005541 GO:0003677|GO:0005634
Apr9g0200 420 SMART KNOX2_2 205 260 IPR005541 GO:0003677|GO:0005634
Apr9g0200 420 Pfam KNOX1 domain 152 192 IPR005540 GO:0003677|GO:0005634
Apr9g0200 420 SMART KNOX1_2 149 193 IPR005540 GO:0003677|GO:0005634
Apr9g0200 420 PANTHER CLASS II KNOTTED-LIKE HOMEOBOX PROTEIN 41 414 - -
Apr9g0200 420 MobiDBLite consensus disorder prediction 259 279 - -
Apr9g0200 420 CDD homeodomain 340 401 IPR001356 GO:0003677
Apr9g0200 420 ProSiteProfiles ELK domain profile. 317 337 IPR005539 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g0200 Apr-Chr9 2543058 2548512 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g0200 1 413 Homeobox Transcription Factor Family AT5G25220 64.062 0.0 522
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Apr9g0200 KNOX2 2.8e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g0200 - - gmx:100812596 613.224