Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g0173 ATGGTACAAGCAAAGAAGTTCAGAGGAGTAAGGCAGCGCCAGTGGGGCTCATGGGTGTCAGAAATTCGTCACCCATTACTGAAGAGAAGGATATGGCTAGGTACATTTGAGACAGCTGAGGCAGCAGCAAGGGCATATGATCAAGCAGCCATTTTAATGAGTGGTCAAAATGCCAAAACCAATTTCCCTGCACCAATGAATCAACCTCAAAGTGCTGCTACTGCTACTACTACCTCTTGTGTAGACTCATTTTTACCTCACAATGCTCTTTCTGAGCTACTAAGCAGAAAGCTCAAAAAGTGTTGCAAAGACCCTTCTCCATCCCTCACTTGTCTGAGGCTAGATTCTGACAATTCCCACATTGGAGTGTGGCAAAAAGGAGCAGGACCACATTCAGACTCTAATTGGATCATAAGGGTGGAGCTTGGAAAGAAGCATGCAGAAGGTGAGTCTAGTGTGTCAACAGGTTCACCACAAAACAGTGCTAGTGTTGGTGATGGTTATGCTGGAAATGAAGAGGACAGAGTTGCCATGCAAATGATTGATGAACTACTTAATTGGAACAATCCCTGTGGTTCAAGTAATTAA 588 0.4422 MVQAKKFRGVRQRQWGSWVSEIRHPLLKRRIWLGTFETAEAAARAYDQAAILMSGQNAKTNFPAPMNQPQSAATATTTSCVDSFLPHNALSELLSRKLKKCCKDPSPSLTCLRLDSDNSHIGVWQKGAGPHSDSNWIIRVELGKKHAEGESSVSTGSPQNSASVGDGYAGNEEDRVAMQMIDELLNWNNPCGSSN* 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g0173 195 CDD AP2 5 64 IPR001471 GO:0003700|GO:0006355
Apr9g0173 195 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700|GO:0006355
Apr9g0173 195 PRINTS Ethylene responsive element binding protein signature 29 45 IPR001471 GO:0003700|GO:0006355
Apr9g0173 195 MobiDBLite consensus disorder prediction 150 166 - -
Apr9g0173 195 ProSiteProfiles AP2/ERF domain profile. 6 63 IPR001471 GO:0003700|GO:0006355
Apr9g0173 195 Gene3D AP2/ERF domain 5 64 IPR036955 GO:0003700|GO:0006355
Apr9g0173 195 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR SHINE 2 1 194 - -
Apr9g0173 195 SMART rav1_2 6 69 IPR001471 GO:0003700|GO:0006355
Apr9g0173 195 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 1 194 - -
Apr9g0173 195 MobiDBLite consensus disorder prediction 147 169 - -
Apr9g0173 195 Pfam AP2 domain 6 54 IPR001471 GO:0003700|GO:0006355
Apr9g0173 195 SUPERFAMILY DNA-binding domain 6 64 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g0173 Apr-Chr9 2245927 2246914 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g0173 1 188 AP2-EREBP Transcription Factor Family AT1G15360 57.286 1.99e-69 208
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Apr9g0173 AP2 4.7e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g0173 - - gmx:100784305 303.908
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g0173 9 2245927 2246914 Apr9g0173 9 2245927 2246914 ECH
Apr9g2818 9 35160045 35161181 Apr9g0173 9 2245927 2246914 ECH