Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g0163 ATGTGTGGTATAGGTGACGATAAACAAGAAGTTGATGAAGGGGATATCGAACCAAGAGAAGAGGATAGCCAATACAGTCTCACAGGCATTCTTCTTCCATCTCTTGGTGCCACAGCTATTTGCAATGACAATCAGAAACATAAGCTTCGTCGTTTCATTATATCCCCAAATAATCACAATTACAGGCTATGGGACAAGTTTCTGGTGATATTGGTTTTCTACACTGGTTGGGTGTGTCCATTTGAATTTGGTTTCCTTGACAAATCTAAAGGTCCACTCATTATAACTGACAATGTTGTAAATGGACTTTTTGCCATTGATATTGTGCTTACATTCTTCGTTGCATACCTTGATAAATCCACTTATTTACTCATTGATGATCATAAGCTCATTGCTTTAAGATATATTAAATCATGGTTGGTCTTTGATGTTATTGCTTCCATTCCTTATGAAGTTGTTCACATTGTGCTACCACCTTCTCTTCAAATATATGGGTACTTCAGTATCCTTCGCCTTTGGCGCCTACGAAGAGTTAGTGCCATGTTTGCAAGATTGGAAAAGGACAGAAATTATAACTACTTTTGGGTCCGTTGCTCCAAGCTTACATGGGTTACTCTATTCTCGGTGCATTTTTCTGCATGCATTTTCTATTTTCTTGCTGTAAGGCGTGATCCAAAATCAACATGGCTTGGACTTGTTCCTGATGCCATTGACCAGAATTTGTGGGGAAAATATGTAGTATCAATATATTGGGCCATAGTGACTCTTACATCAGTTGGTTATGGCGATTTGCACCCTATAAATACAAAAGAAATGGTATTTGATATTTTGTATATGCTCTTTAATCTTGGACTCACCTCATATCTAATAGGAAACATGACCAACTTGGTTGTCCATTGGACAAATAGAACTAAGAGATATAGAGAAACTGTCCAGTCTGCCTCAAATTTTGCCAAAAGGAATCGTTTGCCTATCCGTTTGCAAGAACAAATATTTGCTCACTTGCTTATGAAGTATAGAACTGATTTAGAAGGACTACAACAACAAGAGATTATTGAATCCCTTCCAAAAGCCATTCAATCTAGCATCTCACACTACCTGTTTTATTCACTTATCGATAAAGTGTACTTGTTTCATGGAGTATCAAACGATCTACTTTTTCAATTGGTTACAGAGATGAAGGCTGAATATTTTCCTCCAAAGGAAGATGTGATTTTGCAAAATGAAGCTCCAACAGACTTTTATATATTGATTACTGGAGCAGTTGATCTTGTTATTCAAAAGAATGGAATAGAGCAGGTTATTGGCGAGGCAAGGACAGGAGATTTAGTAGGAGAAATAGGAGTGTTATGTTATAAGCCACAAGTATTTACTGTTAGAACTAAGCGATTAAGCCAACTTCTACGATTGAATCGAACTACATTTGTAAATCTTACTCATTCAAATATTGGAGATGGAACAATAATCATGAACAATTTTCTTCAGCATTTGCATGAATCAGAGGCGCCGTTGATGAGAGAAATTTTGGTAGAAACACAGGCAATGCTAACTCGGGGAAAAATGGATTTGCCAATTAGTTTATTTTTTGCAGCTAACAGAAGTGACGATATATTATTACATCAGTTGCTAAAGAAGGGTTCAGATCCAAATGAAGCAGATAGGAATGGAAAGACTGCATTGCATGTTGCAGCTTCTAAAGGCACTAAACATTGTGTAGTTTTGCTTCTAGAACATGGAGCTGATCCCAACATCCAAGATTCAGATGGAAATGTCCCACTGTGGGAAGCAATAAAAGGTGGGCATGAATCTATCATCAAACTTCTTGAAGACAATGGTGCAAACTTATCATCTGCTGATGTAGGCCATTTTGCATGCATCGCTGTTGAGCAAAATAACTTAGAAATGCTTAAGAACATTGTTCAATGTGGTGGGAATGTGACACGGTCCACAAGTAATGGAACCACTGCCCTCCATTTTGCAGTGAGTGAAGGAAACGTTGAAATGGTGAGATTCCTTATAAACCTTGGAGCAAACATTGACAAGCAAGATGGTAATGGCTTGACTCCAAGGTATTTAGCAGATCAACAATGCCACGAAGAAATACAAAATATTTTCCAAAACATTGGACAAATCAAAGTAACAAATGCTTCTCCTACAATATCAAAGAATGGAGGGTTTGTAAAGTGTCGAAGTACACCCTCTTCCCAAGGACGCATGCCACCTTATCAAGAACTGACATGGTTTGATAATCATCAAAGAAGAAGGGTTAGCCCTTTTCATAATTCCTTTTTTGGGATAATGTCCGCAGCAAGTGATAAAAAGGATTCCAGCTCTCCATCCGTCAGAATAACAGTTAGTTGTCCAGAAAAAGGTGAACATGCCAAAAGGCTTATTTTTCTCCCAAATTCTCTTCACGAACTGCTACATATTGGTGTTGAAAAGTTTGATTACTCACCCACCAAAATATTGACTAAAGAAGGAGCTATAGTTGAAGACATAGAGGTTATAAGAGATGGTGATCTTCTTATTCTTGCGCGCGACTGA 2544 0.3781 MCGIGDDKQEVDEGDIEPREEDSQYSLTGILLPSLGATAICNDNQKHKLRRFIISPNNHNYRLWDKFLVILVFYTGWVCPFEFGFLDKSKGPLIITDNVVNGLFAIDIVLTFFVAYLDKSTYLLIDDHKLIALRYIKSWLVFDVIASIPYEVVHIVLPPSLQIYGYFSILRLWRLRRVSAMFARLEKDRNYNYFWVRCSKLTWVTLFSVHFSACIFYFLAVRRDPKSTWLGLVPDAIDQNLWGKYVVSIYWAIVTLTSVGYGDLHPINTKEMVFDILYMLFNLGLTSYLIGNMTNLVVHWTNRTKRYRETVQSASNFAKRNRLPIRLQEQIFAHLLMKYRTDLEGLQQQEIIESLPKAIQSSISHYLFYSLIDKVYLFHGVSNDLLFQLVTEMKAEYFPPKEDVILQNEAPTDFYILITGAVDLVIQKNGIEQVIGEARTGDLVGEIGVLCYKPQVFTVRTKRLSQLLRLNRTTFVNLTHSNIGDGTIIMNNFLQHLHESEAPLMREILVETQAMLTRGKMDLPISLFFAANRSDDILLHQLLKKGSDPNEADRNGKTALHVAASKGTKHCVVLLLEHGADPNIQDSDGNVPLWEAIKGGHESIIKLLEDNGANLSSADVGHFACIAVEQNNLEMLKNIVQCGGNVTRSTSNGTTALHFAVSEGNVEMVRFLINLGANIDKQDGNGLTPRYLADQQCHEEIQNIFQNIGQIKVTNASPTISKNGGFVKCRSTPSSQGRMPPYQELTWFDNHQRRRVSPFHNSFFGIMSAASDKKDSSSPSVRITVSCPEKGEHAKRLIFLPNSLHELLHIGVEKFDYSPTKILTKEGAIVEDIEVIRDGDLLILARD* 848
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g0163 847 SUPERFAMILY Voltage-gated potassium channels 57 298 - -
Apr9g0163 847 ProSiteProfiles Ankyrin repeat profile. 588 620 IPR002110 GO:0005515
Apr9g0163 847 PANTHER INWARDLY RECTIFYING POTASSIUM CHANNEL SUBUNIT 7 845 - -
Apr9g0163 847 ProSiteProfiles Ankyrin repeat profile. 652 684 IPR002110 GO:0005515
Apr9g0163 847 MobiDBLite consensus disorder prediction 1 23 - -
Apr9g0163 847 Pfam Ankyrin repeats (3 copies) 527 617 IPR002110 GO:0005515
Apr9g0163 847 Pfam Ankyrin repeats (3 copies) 626 702 IPR002110 GO:0005515
Apr9g0163 847 CDD CAP_ED 377 482 IPR000595 -
Apr9g0163 847 Gene3D - 65 298 - -
Apr9g0163 847 Pfam KHA, dimerisation domain of potassium ion channel 782 844 IPR021789 -
Apr9g0163 847 SMART ANK_2a 619 648 IPR002110 GO:0005515
Apr9g0163 847 SMART ANK_2a 555 584 IPR002110 GO:0005515
Apr9g0163 847 SMART ANK_2a 588 617 IPR002110 GO:0005515
Apr9g0163 847 SMART ANK_2a 652 681 IPR002110 GO:0005515
Apr9g0163 847 SMART ANK_2a 522 551 IPR002110 GO:0005515
Apr9g0163 847 Gene3D Jelly Rolls 343 502 IPR014710 -
Apr9g0163 847 ProSiteProfiles Ankyrin repeat region circular profile. 652 683 - -
Apr9g0163 847 ProSiteProfiles Ankyrin repeat region circular profile. 588 619 - -
Apr9g0163 847 Pfam Ion transport protein 62 304 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Apr9g0163 847 SMART cnmp_10 377 494 IPR000595 -
Apr9g0163 847 Pfam Cyclic nucleotide-binding domain 397 481 IPR000595 -
Apr9g0163 847 SUPERFAMILY Ankyrin repeat 507 707 IPR036770 -
Apr9g0163 847 ProSiteProfiles Ankyrin repeat profile. 555 587 IPR002110 GO:0005515
Apr9g0163 847 PRINTS EAG/ELK/ERG potassium channel family signature 97 107 IPR003938 GO:0005249|GO:0006813|GO:0016020
Apr9g0163 847 PRINTS EAG/ELK/ERG potassium channel family signature 108 117 IPR003938 GO:0005249|GO:0006813|GO:0016020
Apr9g0163 847 PRINTS EAG/ELK/ERG potassium channel family signature 245 262 IPR003938 GO:0005249|GO:0006813|GO:0016020
Apr9g0163 847 PRINTS EAG/ELK/ERG potassium channel family signature 271 282 IPR003938 GO:0005249|GO:0006813|GO:0016020
Apr9g0163 847 PRINTS EAG/ELK/ERG potassium channel family signature 289 298 IPR003938 GO:0005249|GO:0006813|GO:0016020
Apr9g0163 847 PANTHER POTASSIUM CHANNEL AKT1 7 845 IPR045319 GO:0005249|GO:0006813
Apr9g0163 847 SUPERFAMILY cAMP-binding domain-like 302 497 IPR018490 -
Apr9g0163 847 ProSiteProfiles Ankyrin repeat region circular profile. 555 586 - -
Apr9g0163 847 Gene3D - 524 707 IPR036770 -
Apr9g0163 847 ProSiteProfiles cAMP/cGMP binding motif profile. 377 496 IPR000595 -
Apr9g0163 847 ProSiteProfiles KHA domain profile. 782 847 IPR021789 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g0163 Apr-Chr9 2137537 2148161 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g0163 23 847 Ion Channels AT2G25600 57.851 0.0 989
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g0163 K21867 - gmx:100808832 1320.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g0163 9 2137537 2148161 Apr9g0163 9 2137537 2148161 ECH
Apr9g0163 9 2137537 2148161 Apr5g1231 5 16762125 16767201 PCT