Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g0150 ATGTCTCAGACTAACTGGGAAGCTGATAAGATGTTAGATGTTTATATCCATGATTACCTAGTGAAGAGGGATTTGAGAGCTTCAGCTGAGGCCTTTCAAGCTGAAGGAAAAGTGTCCTCCGACCCTGTTGCTATTGATGCCCCTGGAGGGTTTCTGTTCGAGTGGTGGTCGGTTTTCTGGGACATATTTATTGCCAGGACTAATGAGAAACACTCAGAGGTTGCTGCATCTTATATCGAGACACAATTAATTAAGGCCAGAGAGCAACAGCAGCAGCAGCAGCAACAACAGCAACAGCAGCAGCAGCCACAGTCTCAGCAGTCACAACATCAACAACAGCAGCAGCAGCAGCAACAACACATGCAAATGCAACAGATGATGTTACAGAGGCAGCAGCAGCAACAGCAGCAGCAGCAACAACAGCAACAGCAACCACCGCCACAACATCAACAGCCACCACCACAGCAACAGCAGAGTAGGGATAGGGCACATCTTTTAAATGGTGGTACGAATGGGTTAGTTGGAAACCCTAGCACGGCAAATGCATTAGCAACAAAGATGTATGAGGACAGGTTGAAACTGCCCCATCAAAGGGACTCTTTGGAAGATGCAGCAATGAAGCAAAGATTTGGTGACCAACTCTTGGACCCAAATCATGCCTCAATATTGAAGTCATCAGCAGCTGCTGGCCAGCCTTCAGGGCAAGTTTTGCATGGTTCTGCTAGTGCAATGTCTCCACAAGTTCAAGCTCGTAGTCAGCAATTACCAGGGTCTACTCCGGATATAAAGAGTGAGATTAATCCTGTTTTAAATCCCAGAGCTGCGGGTCCGGAAGGATCGTTGATGGCAATGCCTGGGCCAAATCAAGGTAGCAACAATTTGACTTTGAAAGGGTGGCCTCTCACAGGCTTGGAGCAACTACGTTCTGGTCTACTTCAACAACAGAAACCTTTCATACAGGCCCCACAGCCTTTTCATCAACTTCCAATGTTGACAGCACAGCATCAGCAACAGCTAATGCTAGCAACTCAAAATTTGGCATCTCCATCTACCAGTGATGATAGTAGAAGAATCAGAATGTTGCTGAATAGTAGAAATATGGGTGTAAGTAAGGATGGTCTTTCGAATCCTGTTGGTGATGTAGTATCAAATGTTGGATCACCTCTTCAAGCAGGTGGCCCTACTTTTCCCCGTAATGATACAGATATGCTAATGAAGTTGAAACTGGCTCAGTTACAGCATCAACAACAGCAGAATGCCAATCCACAACAGCAGCAACTTCAACAGCATACTCTTTCAAATCAACAATCTCAGACTTCCAATCATAACATGCATCAGCCTGATAAAATAGGGGGTGGTGGTGGTAGTGTCAATGTGGATGGTAGCATGTCACACTCCTTCAGAGGAAACGATCAGACTGGGAGAAAGAGAAAACAGCCTGCATCTTCTGGTCCTGCCAATAGTTCAGGAACAGCAAATACAGCTGGCCCTTCTCCTAGTTCAGCACCCTCAACTCCCTCAACACATACACCTGGTGATGTGATGTCCATGCCTGCTTTACCTCATAGTGGTAGTTCTTCAAAGCCTTTAATGTTTGGCTCTGATGGGGGTGGAACTCTCACGTCACCTTCAAACCAGTTGGCTGACATGGACCGTTTTGTGGAGGATGGATCTCTTGATGACAATGTTGAGTCTTTTTTATCCCATGATGATACAGACCCTAGAGATACTGTTGGTCGTTGTATGGATGTAAGCAAAGGTTTAACATTTTCTGAAATGAATTCTGTACGTGCAAGCACTAACAAGGTTGTCTGTTGCCATTTCTCTTCTGATGGGAAATTGCTTGCAAGTGGTGGCCATGACAAAAAGGCTGTTTTATGGTTCACAGATTCTCTAAAACAGAAAGCTACTCTTGAAGAGCATGTATCTTTAATCACTGATGTCCGTTTCAGTCCAAGCATGCCTCGTCTTGCAACATCTTCATATGACAAAACTGTCAGGGTTTGGGATGTTGAGAATCCTGGGTATTCACTTCGCACCTTTACGGGGCATTCTTCACCTGTTATGTCACTAGATTTTCACCCTAATAAAGATGATCTTATCTGCTCTTGTGATGTTGACGGTCAGATACGATATTGGAGCATTAAAAATGGCAGTTGTCCTACAGTCGCACAGGGTGGCACCTCTCAGATGAGATTTCAACCTCGTCTAGGGAGGTACCTAGCTGCAGCTGAAAATAATGTTGTCTCTATACTTGATGTGGAGACACAAGCATGTCGATATTCACTAAAGGGACATACAAAATCAATACATTCTGTGTGTTGGAACCCTTCTGGGGAGTTCTTGGCATCTGTCAGTGAGGACTCTGTCAGGGTTTGGACTCTTGGAAGTGGGAGTGAAGGGGAATGTGTTCATGAGCTTAGTTGTAGTGGCAATAGGTTCCACTCCTGCGTTTTCCATCCAACATATTCTTCACTGTTGGTCGTTGGCTGTTACCAGTCATTGGAGCTTTGGAACATGACTGAAAACAAGACAATGACTCTATCTGCTCACGATGGTCTTATTGCTGCTTTGGCCGTTTCAACTGTAAATGGCTTGGTTGCTTCAGCCAGTCATGACAAGTTTGTCAAGCTTTGGAAGTGA 2643 0.4502 MSQTNWEADKMLDVYIHDYLVKRDLRASAEAFQAEGKVSSDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSEVAASYIETQLIKAREQQQQQQQQQQQQQQPQSQQSQHQQQQQQQQQHMQMQQMMLQRQQQQQQQQQQQQQQPPPQHQQPPPQQQQSRDRAHLLNGGTNGLVGNPSTANALATKMYEDRLKLPHQRDSLEDAAMKQRFGDQLLDPNHASILKSSAAAGQPSGQVLHGSASAMSPQVQARSQQLPGSTPDIKSEINPVLNPRAAGPEGSLMAMPGPNQGSNNLTLKGWPLTGLEQLRSGLLQQQKPFIQAPQPFHQLPMLTAQHQQQLMLATQNLASPSTSDDSRRIRMLLNSRNMGVSKDGLSNPVGDVVSNVGSPLQAGGPTFPRNDTDMLMKLKLAQLQHQQQQNANPQQQQLQQHTLSNQQSQTSNHNMHQPDKIGGGGGSVNVDGSMSHSFRGNDQTGRKRKQPASSGPANSSGTANTAGPSPSSAPSTPSTHTPGDVMSMPALPHSGSSSKPLMFGSDGGGTLTSPSNQLADMDRFVEDGSLDDNVESFLSHDDTDPRDTVGRCMDVSKGLTFSEMNSVRASTNKVVCCHFSSDGKLLASGGHDKKAVLWFTDSLKQKATLEEHVSLITDVRFSPSMPRLATSSYDKTVRVWDVENPGYSLRTFTGHSSPVMSLDFHPNKDDLICSCDVDGQIRYWSIKNGSCPTVAQGGTSQMRFQPRLGRYLAAAENNVVSILDVETQACRYSLKGHTKSIHSVCWNPSGEFLASVSEDSVRVWTLGSGSEGECVHELSCSGNRFHSCVFHPTYSSLLVVGCYQSLELWNMTENKTMTLSAHDGLIAALAVSTVNGLVASASHDKFVKLWK* 881
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g0150 880 MobiDBLite consensus disorder prediction 412 545 - -
Apr9g0150 880 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 638 673 - -
Apr9g0150 880 CDD WD40 596 880 - -
Apr9g0150 880 Gene3D - 729 880 IPR015943 GO:0005515
Apr9g0150 880 Coils Coil 121 143 - -
Apr9g0150 880 MobiDBLite consensus disorder prediction 95 145 - -
Apr9g0150 880 Pfam LisH 10 36 IPR006594 GO:0005515
Apr9g0150 880 SMART WD40_4 756 794 IPR001680 GO:0005515
Apr9g0150 880 SMART WD40_4 674 714 IPR001680 GO:0005515
Apr9g0150 880 SMART WD40_4 631 670 IPR001680 GO:0005515
Apr9g0150 880 SMART WD40_4 589 628 IPR001680 GO:0005515
Apr9g0150 880 SMART WD40_4 800 839 IPR001680 GO:0005515
Apr9g0150 880 SMART WD40_4 841 880 IPR001680 GO:0005515
Apr9g0150 880 Gene3D - 572 728 IPR015943 GO:0005515
Apr9g0150 880 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 681 719 - -
Apr9g0150 880 ProSiteProfiles LIS1 homology (LisH) motif profile. 8 40 IPR006594 GO:0005515
Apr9g0150 880 ProSiteProfiles Trp-Asp (WD) repeats profile. 638 673 IPR001680 GO:0005515
Apr9g0150 880 MobiDBLite consensus disorder prediction 95 178 - -
Apr9g0150 880 ProSiteProfiles Trp-Asp (WD) repeats profile. 681 723 IPR001680 GO:0005515
Apr9g0150 880 Pfam WD domain, G-beta repeat 636 670 IPR001680 GO:0005515
Apr9g0150 880 Pfam WD domain, G-beta repeat 759 793 IPR001680 GO:0005515
Apr9g0150 880 Pfam WD domain, G-beta repeat 843 880 IPR001680 GO:0005515
Apr9g0150 880 Pfam WD domain, G-beta repeat 597 627 IPR001680 GO:0005515
Apr9g0150 880 Pfam WD domain, G-beta repeat 677 714 IPR001680 GO:0005515
Apr9g0150 880 ProSiteProfiles Trp-Asp (WD) repeats profile. 596 627 IPR001680 GO:0005515
Apr9g0150 880 PANTHER TRANSCRIPTIONAL COREPRESSOR LEUNIG-LIKE PROTEIN 1 880 - -
Apr9g0150 880 MobiDBLite consensus disorder prediction 227 265 - -
Apr9g0150 880 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 848 880 - -
Apr9g0150 880 MobiDBLite consensus disorder prediction 476 512 - -
Apr9g0150 880 MobiDBLite consensus disorder prediction 154 178 - -
Apr9g0150 880 ProSiteProfiles Trp-Asp (WD) repeats profile. 848 880 IPR001680 GO:0005515
Apr9g0150 880 SUPERFAMILY WD40 repeat-like 592 880 IPR036322 GO:0005515
Apr9g0150 880 MobiDBLite consensus disorder prediction 520 545 - -
Apr9g0150 880 SMART Lish 8 40 IPR006594 GO:0005515
Apr9g0150 880 ProSiteProfiles Trp-Asp (WD) repeats profile. 763 803 IPR001680 GO:0005515
Apr9g0150 880 MobiDBLite consensus disorder prediction 412 446 - -
Apr9g0150 880 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 1 880 IPR044716 GO:0003714
Apr9g0150 880 ProSitePatterns Trp-Asp (WD) repeats signature. 657 671 IPR019775 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g0150 Apr-Chr9 1804267 1816757 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g0150 675 879 Miscellaneous Gene Families AT5G08390 24.762 6.05e-13 70.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Apr9g0150 WD40 0.047 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g0150 - - gmx:100779972 1268.45
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g0150 9 1804267 1816757 Apr5g1221 5 16667520 16677821 PCT