Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g0145 ATGAATAGAGAAAATGCTGCAATTAGTGGTGTGAGAGATGGTGGACAACTAGTGGTTCGAGTTACTCGAGCAATGGCTAGATCATTGGGAGGGGTATCTAACTCTTCCAGACCCTCTTTTAAAAAGGAAAGCAAAGGCCAAGCTTCTATTGATAAGAACAGGGCAGTGTTAGGAGATGTTACCAACATCTGCAGAAAATCACAGGACAAGTGTGTTGAGGCAAGGAAATTTCAGACAAGAGGAGGTTATAAGAAGAGAAATGCAAAGGGAGCTTCAGATGTCTCCATGCAAGTTTTGTCAACCCAAGAGGATGTTAGAGCAAAGGTAGCTAAAGACTATTCCACAATATTGATGGAAGAATCACATGACAACTTCGTAGCAGAAAGGCTGGAAGACAGAGCGCCACTACAACCCTGTATGGCTGATAACATGAGAGAATGTGGTATGGCAGTTCCCCTGCTTTCAGTGCAGGACTCTAAGAAGTCTGATGAACTTCTGAGTTCTCCAGATAAAGACATAGAAATGATTTGTGAGAAACTAAGAGCCTCAGATGGATTGGGCATTGTGGACATTGATTCAGAGGAGTTAAAGGATCCTCAAGTTTGGAGTTCTTATGCCCCTGATATATACAATAATATATGCATCAGAGAGTATGAAAGCAGGCCGGTAATTGCCAATTACATGGACAAGTTGCAGCAAGATATCACTCCAAGCATGCGAGGAATTCTTGTTGATTGGCTTGTAGAGGTTTCTGAGGAATATAAGTTAGTTCCTGACACTCTCTACCTGACGGTGAATCTCATTGATCGGTTTCTTTCTAGATGTTTGGTTCAGAAACAAAGGCTCCAGTTGGTGGGTGTTACATGCATGCTGCTTGCATCAAAGTATGAAGAGATTTGTGCTCCTCGAGTGGAAGAATTTTGCTTCATAACAGATAATACATACACAAAAGCGGAGGTATTGAAAATGGAGAGTGAGGTTCTAAATCTTTTGCATTTTCAATTATCTGTTCCCACCACTAAAACATTTCTCAGGAGGTTCATCCAAGCAGCACAGTCTTCCTACAAGGTTAGCTATGTTGAACTGGAGTTCCTGGCAAATTATTTAGCAGAGCTTACTCTTCTTGAATATAGCTTCTTGCAGTTTCTACCTTCCCTGATAGCTGCATCGGCCGTATTACTTGCCAAGTGGACCCTCAACCAGTCAGAACATCCATGGAATTCAACTATGGAGCACTATACAAATTACAAAGTGTTAGAGCTTAAAACTACTGTCCTTGCGCTGGCAGATTTGCAACTTAATACCAAAGGCTGTTGCCTGAATGCTATTCACGAAAAATATAAACAACAGAAGTTCAAGAGCGTGGCAAATTTGTCTCCAAAAGCGGTGCAGTCACTTTTCCAGGTTCAAGTGTAA 1416 0.416 MNRENAAISGVRDGGQLVVRVTRAMARSLGGVSNSSRPSFKKESKGQASIDKNRAVLGDVTNICRKSQDKCVEARKFQTRGGYKKRNAKGASDVSMQVLSTQEDVRAKVAKDYSTILMEESHDNFVAERLEDRAPLQPCMADNMRECGMAVPLLSVQDSKKSDELLSSPDKDIEMICEKLRASDGLGIVDIDSEELKDPQVWSSYAPDIYNNICIREYESRPVIANYMDKLQQDITPSMRGILVDWLVEVSEEYKLVPDTLYLTVNLIDRFLSRCLVQKQRLQLVGVTCMLLASKYEEICAPRVEEFCFITDNTYTKAEVLKMESEVLNLLHFQLSVPTTKTFLRRFIQAAQSSYKVSYVELEFLANYLAELTLLEYSFLQFLPSLIAASAVLLAKWTLNQSEHPWNSTMEHYTNYKVLELKTTVLALADLQLNTKGCCLNAIHEKYKQQKFKSVANLSPKAVQSLFQVQV* 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g0145 471 SMART cyclin_7 342 430 IPR013763 -
Apr9g0145 471 SMART cyclin_7 245 329 IPR013763 -
Apr9g0145 471 Pfam Cyclin, N-terminal domain 208 336 IPR006671 -
Apr9g0145 471 Pfam Cyclin, C-terminal domain 338 460 IPR004367 -
Apr9g0145 471 CDD CYCLIN 239 328 IPR013763 -
Apr9g0145 471 SMART Cyclin_C_2 338 461 IPR004367 -
Apr9g0145 471 CDD CYCLIN 336 416 IPR013763 -
Apr9g0145 471 PIRSF Cyclin_A_B_D_E 18 470 IPR039361 -
Apr9g0145 471 PANTHER CYCLIN-A2-4 36 467 - -
Apr9g0145 471 Gene3D - 208 457 - -
Apr9g0145 471 PANTHER CYCLINS 36 467 IPR039361 -
Apr9g0145 471 SUPERFAMILY Cyclin-like 337 460 IPR036915 -
Apr9g0145 471 ProSitePatterns Cyclins signature. 240 271 IPR006671 -
Apr9g0145 471 Gene3D - 222 336 - -
Apr9g0145 471 SUPERFAMILY Cyclin-like 197 335 IPR036915 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g0145 Apr-Chr9 1722565 1729171 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g0145 3 467 Core Cell Cycle Gene Families AT5G25380 50.207 6.45e-147 425
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g0145 K06627 - gmx:100777132 681.789
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g0145 9 1722565 1729171 Apr9g0145 9 1722565 1729171 ECH
Apr5g1216 5 16615398 16619419 Apr9g0145 9 1722565 1729171 ECH
Apr9g0145 9 1722565 1729171 Apr5g1216 5 16615398 16619419 PCT