Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g0142 ATGGAGCGGCTGGGGAGCTTCAATGGCAGTCAGCATGTTATAGAAATAGCTGGTAGTGCAGATGCTTCCACCTCATCTGCCTCACCTCACGATAGACATTTTAGTGGTGTAGATGCTGCACAGCATGAAGAAAGAATAAGTGGAGTGCGGATGCCTCTTTCTCAGCCTTCGGTTTCTACCTCCAGTGTATCTAATGGAACAAATAGTAGGAATTCTTCATTTATAAGACGGGGGGATACTCGTCGGAATAGGAGTCCTGTGCATTCAGGGTTATGGATATCTATTGAGCTGGTCCTCTTAGTGGGCCAGATTGTTGCATCTATAGTTGTTTTGTCTTTGTCAAGGCATGAGCATCCACGTACCCCGTTGTTTCAATGGATCGTAGGTTATGCTTCTGGATGTGCTGCTACCCTCCCTCTGCTTTATTGGCGGTATTATCATCATAACCATATGCGAGAGCAAGATTCATCTCTATCGCGGCAAACATCTCCTCGGATTAATGATCCTTCAGGGACACTTCTTTCCAGTTCCAGAACTAATGGAGGAGAAGATGGTCATCCTATTACTGTGTCCTCCAGAAGTATTCAAGCTTCAGTGTTGATGAACAGAAGAATGAAAACACTAGTGGAATACTTCAAAATATCCTTAGATTGCTTTTTTGCTGTATGGTTTGTTGTTGGAAATGTATGGATCTTTGGGGGACATTCGTCTGCTGATGAAGCTCCTAACTTGTACAGGTTATGTATAGTGTTTCTTGCATTTAGTTGTATTGGCTATGCTATGCCCTTCATTCTCTGTTCAACAATCTGCTGTTGTCTTCCTTGTTTAATTTCCATCCTTGGGGTTAGAGAGGATTTGTCACAAAACAGGGGGGCAACCTCTGAATCCATTAATGCTCTGCCAACTTACAAGTTCAAGACGAAGAAAAATAAAAGAAATGGTGAAGGTAACATAGCTGCTGAAGGTGGAATTGTTGCTGCAGGAACTGAAAAAGAGCGTGTGATTTCTGGAGAAGATGCAGTTTGCTGCATCTGCCTGGCTAAGTATGAAAATAATGATGAACTGAGAGAATTGCCTTGTTCGCATCTTTTCCACAAAGACTGCGTTGATAAATGGTTAAAGATAAATGCATTATGCCCTCTTTGCAAGAGTGAGGTTGGTGAGAGCTTAACAGGATTGGTCTCGGGAGAGGATGCCAGCCAACAACGGGTTGAGAATGGCCTCACGAATACCTCAGTTTAA 1242 0.4308 MERLGSFNGSQHVIEIAGSADASTSSASPHDRHFSGVDAAQHEERISGVRMPLSQPSVSTSSVSNGTNSRNSSFIRRGDTRRNRSPVHSGLWISIELVLLVGQIVASIVVLSLSRHEHPRTPLFQWIVGYASGCAATLPLLYWRYYHHNHMREQDSSLSRQTSPRINDPSGTLLSSSRTNGGEDGHPITVSSRSIQASVLMNRRMKTLVEYFKISLDCFFAVWFVVGNVWIFGGHSSADEAPNLYRLCIVFLAFSCIGYAMPFILCSTICCCLPCLISILGVREDLSQNRGATSESINALPTYKFKTKKNKRNGEGNIAAEGGIVAAGTEKERVISGEDAVCCICLAKYENNDELRELPCSHLFHKDCVDKWLKINALCPLCKSEVGESLTGLVSGEDASQQRVENGLTNTSV* 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g0142 413 MobiDBLite consensus disorder prediction 156 189 - -
Apr9g0142 413 MobiDBLite consensus disorder prediction 19 85 - -
Apr9g0142 413 ProSiteProfiles Zinc finger RING-type profile. 342 383 IPR001841 -
Apr9g0142 413 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 405 - -
Apr9g0142 413 CDD RING-H2_RNF111_like 341 383 - -
Apr9g0142 413 MobiDBLite consensus disorder prediction 52 74 - -
Apr9g0142 413 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 325 389 IPR013083 -
Apr9g0142 413 SMART ring_2 342 382 IPR001841 -
Apr9g0142 413 Pfam Ring finger domain 342 383 IPR001841 -
Apr9g0142 413 MobiDBLite consensus disorder prediction 154 189 - -
Apr9g0142 413 SUPERFAMILY RING/U-box 334 389 - -
Apr9g0142 413 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 1 405 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g0142 Apr-Chr9 1674431 1682010 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g0142 76 389 C3H Transcription Factor Family AT1G80400 59.248 1.02e-140 405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g0142 - - gmx:100778728 717.227
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g0142 9 1674431 1682010 Apr9g0142 9 1674431 1682010 ECH
Apr5g1214 5 16602231 16605817 Apr9g0142 9 1674431 1682010 ECH