Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g0106 ATGCCGGGATTAACGTGCAACGCTTGCAATGCTGAATTCAGAGATGATACAGAGCAAAAGCTCCATTACAAGTCCGAGTGGCATCGCTACAACCTCAAGCGCAAGGTAGCTGGGGTTCCAGGGGTGACTGAAGCACTATTTATGGCTAGACAATCTGTTCTAGCTCAAGAGAAAGATAAATCGAGTGAAACCCCAATGCTTTATAGCTGTGGTCTTTGTGGAAAGGATTATAAAAGCTCTAAGGCTCATGCTGAGCACCTTAAATCACGTGGTCATATGATGCGGATTTCTGAAGGAACTAGTCATGCAGATGAAAAGGCAATAATTAAGCCACTTCCACAACGTGCTGTGAATAGGCCACCTACTAGAAGAGAGGTTGATAACCCTGAAAACGAAGAAAGTGAAGATGAATGGGAGGAGGTTGATCCTGAAGATGATCTGGTTGATGATGCTGCAAAGTCCTTGACTGATTTGAATGTAAATGAGCATGGTAGTAACGATGATAATATGGATGAAAATGATGATGATTTTGAGGAGTTAGATCCATCGTCTTGCTTTATGTGCGATCAAGAGCACAAAACAATAGAAGATTGCATGGCTCACATGCACAAGCATCATGGATTCTTCATTCCAGATGTTGAGTATTTGAAGGATCCAAAAGGCCTTCTCACCTATCTTGGCCTTAAGGTCAGAAGGGACTTCATGTGCCTGTACTGCAATGATCGATGTTATCCTTTCAGCTGCTTGGAAGCTGTCAGGAAACATATGGCAGCAAAAAGTCACTGTAAAGTGCATTATGGTGACGATGATGATGACGAGGAAGTAGAGTTAGAAGAATTCTATGATTATAGCAGCAGTTATGTGGATGAGCAAGGTAAGCAGCTGGTTGTATCTGGTGATTCAGCAAACAATGTAGAACTTGTTGGTGGGTCTGAGCTCATAATAACTAGGAAATCTGGTGGTAGAATATCAACCAGAACACTTGGTTCCCGTGAATTTTTGCGTTACTATCGTCAAAAACCACGACCATCACCAGTAAATAGTATGGCCATCACTGCAGCATTGGCTTCAAGGTACAGGAGCATGGGTTTGGCCACCCTCCAATCAAGGGAGCAAATTGTGAGGATGAAAGTCCTTAAGGAAATGAATCGGTCAGGTGTGGAGAATATGCGCACCAAGATAGGGATGAAGAGTAATGTCATCCGGAACTTGCCAAAGAATGTCCCATATTAG 1233 0.4298 MPGLTCNACNAEFRDDTEQKLHYKSEWHRYNLKRKVAGVPGVTEALFMARQSVLAQEKDKSSETPMLYSCGLCGKDYKSSKAHAEHLKSRGHMMRISEGTSHADEKAIIKPLPQRAVNRPPTRREVDNPENEESEDEWEEVDPEDDLVDDAAKSLTDLNVNEHGSNDDNMDENDDDFEELDPSSCFMCDQEHKTIEDCMAHMHKHHGFFIPDVEYLKDPKGLLTYLGLKVRRDFMCLYCNDRCYPFSCLEAVRKHMAAKSHCKVHYGDDDDDEEVELEEFYDYSSSYVDEQGKQLVVSGDSANNVELVGGSELIITRKSGGRISTRTLGSREFLRYYRQKPRPSPVNSMAITAALASRYRSMGLATLQSREQIVRMKVLKEMNRSGVENMRTKIGMKSNVIRNLPKNVPY* 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g0106 410 ProSitePatterns Zinc finger C2H2 type domain signature. 70 92 IPR013087 -
Apr9g0106 410 SUPERFAMILY beta-beta-alpha zinc fingers 166 240 IPR036236 -
Apr9g0106 410 Pfam C2H2 type zinc-finger (2 copies) 185 286 IPR041661 -
Apr9g0106 410 PANTHER ZINC FINGER PROTEIN 622 1 410 IPR040025 -
Apr9g0106 410 ProSitePatterns Zinc finger C2H2 type domain signature. 243 265 IPR013087 -
Apr9g0106 410 MobiDBLite consensus disorder prediction 156 178 - -
Apr9g0106 410 PANTHER ZINC FINGER PROTEIN-RELATED 1 410 - -
Apr9g0106 410 SUPERFAMILY beta-beta-alpha zinc fingers 3 36 IPR036236 -
Apr9g0106 410 SMART c2h2final6 4 28 IPR013087 -
Apr9g0106 410 SMART c2h2final6 234 261 IPR013087 -
Apr9g0106 410 SMART c2h2final6 68 92 IPR013087 -
Apr9g0106 410 SMART c2h2final6 183 205 IPR013087 -
Apr9g0106 410 MobiDBLite consensus disorder prediction 112 144 - -
Apr9g0106 410 ProSitePatterns Zinc finger C2H2 type domain signature. 6 28 IPR013087 -
Apr9g0106 410 MobiDBLite consensus disorder prediction 130 144 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g0106 1 410 C2H2 Transcription Factor Family AT4G31420 66.425 0.0 540
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g0106 K14816 - gmx:100796317 691.804
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g0106 9 1312968 1315892 Apr9g0106 9 1312968 1315892 ECH