LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Apr9g0105	ATGGGTGGCATCAGCCTCGAAGAGATCAAAAACGAGAACGTCGATCTGGAACGGATTCCAATAGAGGAGGTGTTTGAGCAACTGAAATGTTCAAGAGCAGGTCTAACATCAGACGAAGGGGCCAACAGGCTTCAAGTCTTTGGACCAAACAAATTGGAAGAGAAAAAAGAGAGCAAAGTTTTGAAGTTCTTGGGTTTTATGTGGAACCCCTTGTCTTGGGTCATGGAAGCTGCTGCTATAATGGCCATTGCTTTAGCAAATGGAGGAGGAAGGCCACCAGATTGGCAAGATTTTGTCGGAATTATTGCTCTTCTTGTGATCAACTCCACAATCAGTTTTATTGAGGAAAACAATGCTGGCAATGCTGCTGCTGCTCTTATGGCCGGTTTAGCTCCCAAGACCAAGGTACTAAGGGATGGCCATTGGAGTGAACAAGATGCTGCAATTTTAGTACCTGGAGACATAATCAGCATTAAGTTAGGAGATATCATTCCAGCTGATGCCCGTCTTCTTGACGGCGACCCTTTGAGTGTTGATCAGTCTGCTTTAACTGGAGAATCTCTTCCTGTGACAAAGAATCCCTCAGATGAAGTGTTTTCAGGATCAACTGTTAAGAAGGGCGAGATAGAAGCAGTTGTGATTGCAACTGGTGTGCACACCTTTTTTGGCAAAGCAGCTCATCTTGTGGACAGCACTAATCAAGTTGGACACTTCCAGAAAGTGCTTACAGCAATTGGTAATTTCTGCATTTGCTCAATTGCTGTTGGAATTGCTATTGAGCTCATAGTTATGTACCCGATACAACACCGCAAGTACCGGGATGGAATTGACAATCTGTTGGTTCTCTTGATTGGAGGAATTCCCATTGCCATGCCAACTGTGTTGTCTGTCACTATGGCTATTGGTTCTCACAGGCTTTCTCAGCAAGGTGCCATTACAAAAAGAATGACAGCCATTGAGGAAATGGCAGGGATGGATGTTCTATGCAGTGACAAAACTGGAACTCTCACCTTGAACAAGTTGAGTGTTGATAGAAGCTTGATTGAGGTGTTTGCTAAAGGTGTTGAGAAGGAGTATGTTATCCTTCTAGCAGCCAGAGCTTCCAGGACTGAAAATCAAGATGCTATAGATGCTGCAATTGTTGGGATGCTTGCTGACCCAAAGGAGGCACGAGCCGGCATTAGGGAGGTACATTTTCTTCCTTTCAATCCGGTAGACAAGAGGACTGCTCTAACCTACATTGATTCTGATGGACATTGGCATCGAGCTAGCAAAGGGGCCCCCGAGCAGATCCTGAATCTTTGCAACTGCAAAGAGGATGTTAGGAAAAAGGTTCATGCAGTAATTGATAAGTTTGCTGAGCGTGGACTTCGGTCTTTAGGTGTTGCAAGACAGGAAGTACCTGAAAAAACAAGAGATAGTCCTGGTGGACCATGGCAATTTTTTGGTCTGCTACCATTGTTTGATCCTCCTAGGCATGATAGTGCTGAAACAATTAGAAGAGCTCTTAATCTTGGTGTGAATGTTAAGATGATTACTGGGGATCAGCTTGCCATTGGAAAGGAAACTGGCCGAAGGCTTGGAATGGGAACAAACATGTACCCTTCATCTTCTTTGCTTGGCCAAGACAAGGATGCTTCTATTTCAGCTCTTCCAGTTGATGAGTTGATTGAGAAGGCCGATGGATTTGCAGGAGTATTTCCTGAACACAAATATGAAATTGTTAAGAGGCTGCAAGAGAGGAAGCATATCTGTGGAATGACAGGAGATGGTGTAAACGATGCCCCTGCATTAAAGAAAGCAGATATTGGAATTGCTGTTGCTGATGCCACAGATGCTGCTAGAAGTGCTTCTGATATTGTCCTCACTGAACCTGGTCTGAGTGTCATTATTAGTGCAGTGCTCACCAGCAGGGCAATTTTCCAAAGAATGAAGAACTATACTATCTATGCTGTGTCAATCACCATTCGTATTGTGTTTGGCTTCTTGTTCATTGCGTTGATCTGGAAGTTTGACTTTGCGCCCTTCATGGTTTTGATCATTGCCATACTAAATGATGGTACCATTATGACAATTTCCAAGGATAGAGTGAAACCATCTCCACTGCCTGATAGCTGGAAACTGAGGGAGATATTTGCTACTGGTGTTGTGCTGGGAAGTTACTTGGCACTAATGACAGTAATATTTTTCTGGGCAATGAAAGATACCAACTTCTTCTCGAACAAGTTTGGTGTGAGGTCACTGAGAAATAGCCCTGAAGAGATGATGGCAGCATTGTACCTACAAGTCAGTATAATAAGTCAGGCACTAATCTTTGTCACTAGGTCCCGAAGCTGGTCTTTTGTTGAAAGACCTGGTCTTCTCCTACTAGGAGCTTTTATGATTGCTCAGTTGGTTGCAACATTTATAGCAGTATATGCTAATTGGGGCTTTGCAAGAATAAAGGGAATGGGATGGGGTTGGGCTGGTGTAATCTGGGTGTACAGTGTGGTAACCTATATCCCTCTTGATTTACTCAAATTTGCAATCCGTTATATTCTAAGTGGGAAAGCTTGGGATAATCTTTTGGAGAACAAGACTGCCTTCACTACAAAGAAAGACTATGGCAAAGAAGAGAGGGAAGCTCAATGGGCAGCTGCACAAAGGACACTTCATGGTCTTCAACCTCCTGAAACCTCCAACCTTTTCAATGAGAAGAATAGCTATAGGGAGCTTTCAGAGATTGCAGAGCAAGCCAAGAGACGTGCCGAAGTTGCTAGGCTTAGGGAGCTTCATACTTTGAAGGGACACGTTGAGTCAGTGGTGAAGCTGAAGGGACTTGACATTGATACAATTCAGCAGCACTATACAGTTTAA	2856	0.4373	MGGISLEEIKNENVDLERIPIEEVFEQLKCSRAGLTSDEGANRLQVFGPNKLEEKKESKVLKFLGFMWNPLSWVMEAAAIMAIALANGGGRPPDWQDFVGIIALLVINSTISFIEENNAGNAAAALMAGLAPKTKVLRDGHWSEQDAAILVPGDIISIKLGDIIPADARLLDGDPLSVDQSALTGESLPVTKNPSDEVFSGSTVKKGEIEAVVIATGVHTFFGKAAHLVDSTNQVGHFQKVLTAIGNFCICSIAVGIAIELIVMYPIQHRKYRDGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLSVDRSLIEVFAKGVEKEYVILLAARASRTENQDAIDAAIVGMLADPKEARAGIREVHFLPFNPVDKRTALTYIDSDGHWHRASKGAPEQILNLCNCKEDVRKKVHAVIDKFAERGLRSLGVARQEVPEKTRDSPGGPWQFFGLLPLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIGKETGRRLGMGTNMYPSSSLLGQDKDASISALPVDELIEKADGFAGVFPEHKYEIVKRLQERKHICGMTGDGVNDAPALKKADIGIAVADATDAARSASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVFGFLFIALIWKFDFAPFMVLIIAILNDGTIMTISKDRVKPSPLPDSWKLREIFATGVVLGSYLALMTVIFFWAMKDTNFFSNKFGVRSLRNSPEEMMAALYLQVSIISQALIFVTRSRSWSFVERPGLLLLGAFMIAQLVATFIAVYANWGFARIKGMGWGWAGVIWVYSVVTYIPLDLLKFAIRYILSGKAWDNLLENKTAFTTKKDYGKEEREAQWAAAQRTLHGLQPPETSNLFNEKNSYRELSEIAEQAKRRAEVARLRELHTLKGHVESVVKLKGLDIDTIQQHYTV*	952

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Apr9g0105	951	Pfam	Cation transporter/ATPase, N-terminus	19	81	IPR004014	-
	Apr9g0105	951	PRINTS	H+-transporting ATPase (proton pump) signature	445	463	IPR001757	GO:0005215\|GO:0005524\|GO:0016021\|GO:0016887
	Apr9g0105	951	PRINTS	H+-transporting ATPase (proton pump) signature	560	576	IPR001757	GO:0005215\|GO:0005524\|GO:0016021\|GO:0016887
	Apr9g0105	951	PRINTS	H+-transporting ATPase (proton pump) signature	588	604	IPR001757	GO:0005215\|GO:0005524\|GO:0016021\|GO:0016887
	Apr9g0105	951	PRINTS	H+-transporting ATPase (proton pump) signature	619	644	IPR001757	GO:0005215\|GO:0005524\|GO:0016021\|GO:0016887
	Apr9g0105	951	PRINTS	H+-transporting ATPase (proton pump) signature	760	781	IPR001757	GO:0005215\|GO:0005524\|GO:0016021\|GO:0016887
	Apr9g0105	951	SUPERFAMILY	Calcium ATPase, transduction domain A	132	229	IPR008250	-
	Apr9g0105	951	TIGRFAM	ATPase-IIIA_H: plasma-membrane proton-efflux P-type ATPase	34	806	IPR006534	GO:0008553\|GO:0016021\|GO:0120029
	Apr9g0105	951	SFLD	p-type atpase	311	639	IPR044492	-
	Apr9g0105	951	Coils	Coil	902	922	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Apr9g0105	Apr-Chr9	1270981	1279900	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Apr9g0105	5	951	Primary Pumps ATPases	AT3G42640	84.055	0.0	1628

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Apr9g0105	K01535		-	gmx:100791692	1775.76

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Apr9g0105	9	1270981	1279900	Apr5g1184	5	16296544	16304551	PCT

Showing 1 to 1 of 1 entries