Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g0102 ATGGATGGATATTCCGGTAAAAGAGGCATAGATGGGGTGGTAGTTCCAAGAAAGGGGATGGGCCATGTGCTTAGAGATACTGCTAATAGTAGAGATCAAAAGGGTCAAATTTGCAGCCGATTGGGTTGCAGTGGTAGTGCCAATCTTCCTAAAGTTGCTCAAGTCAAATCTTCTGACAAAGGTAAATCTATGAGGTCCTATTCCGGTAGCAAGGAAGCAATTGGAAGTTCCTCCAGAACTACTAGTAAGTCAGGAAAACTGCTTATAGAGTCTCGGAAAACATTATCTTCTCAGTTTGAGATAGATTCATCTGAAACTAGTAGCGTGCAAGATGAACCAGAAATTTCAGAGCTGATACCTCTGCCAGAAGAAAGTCAGAGAAGGCTTCAAGATGAAGGGGAAAGTACAGAGTCTAGTGAAGTGATATCTGTGGAAGTAGGAAGCTCTAATGCAGTATCAAATACAAGATCTCAAAGGAGTTTTAATCGAAGACCTGGATTGCGTGAGCAAGAAAATAAAAGCAGTGTTCCAGTGAGACGTTCTGGTACCTGTAGGTATGAGTTGAGGAGCTTCAGATGCAACTCTATATCTGATGTCATCCCAGCTGGTAGTTCATCATCAGATTCAACCCTTAATAGAAAGAAGGATTCAATGAAAAAGAGAAACTGTGAAGGGGAAAGTAGTTCCACTGTTAAGGGCAAGAAAATTATTGGATCTTCTCAGATAGGACGGAATTCTGGCTCCCGGATTGGGCTATCTATCTCTGATTCAAGAAGATCTAGAAATTTGCCTTCTCACAGTGACATCAGCACAGCATCAGTTAGAACTCAAAAATCAAATAGTGGTCATGCAAGGGGAAGGTTTACTAGCCAAGGAAATGGAAATCCTGTGGCAACCTGTGAATCCTCTGTTATCGTACCCCTTTCACCTCATTCTGATGATCTTGATGCTTCTGGCATTTCATATCATTCTTCTTCAGAGACTCCTTTCAGTTGTTCAAGCTCTTATGGTAGACCAGGCACTAGCAGTGAGCAGTTATGTGATGCTATGCCTGTGTCTCCTGCAGAATATGACATCACTCATTCTCTAATAAACTGGGATGGCTTTCAACACTACAATATGGATGGTATGGCCGAGGTTTTGTTGGCACTTGAGAGGATCGAACAAGATGAAGAGCTAACTGACGAGCAAATTATTTTATTGGAAAACAGTTTGCTCCTTAATGGACTAAACTTTTATGATCACCACAGAGACATGCGGATGGATATTGATAACATGTCCTATGAGGAACTTTTAGCTCTAGAAGAAAGGATGGGTACTGTGAGCACAGCTCTAACAGAGGAAGCACTTTCAGAATGTCTGAAAACAAGTACATATCAGTCTGCACCTTCAGATGATGTGGCCGAGAATTGTGAGGAGGATAAGGATGATATCAAATGCTGCATCTGCCAGGAGGAATATGTCATTGGAGATGAAGTTGGAAGTCTGCAATGTAAGCATAGATTCCACGTGATTTGCATTCAGGAGTGGCTGCGGCTGAAGAATTGGTGCCCTATTTGTAAAGTATCAGCAGCACTGTCCAATTCTTCATCTTTGCCTCATTGA 1605 0.4193 MDGYSGKRGIDGVVVPRKGMGHVLRDTANSRDQKGQICSRLGCSGSANLPKVAQVKSSDKGKSMRSYSGSKEAIGSSSRTTSKSGKLLIESRKTLSSQFEIDSSETSSVQDEPEISELIPLPEESQRRLQDEGESTESSEVISVEVGSSNAVSNTRSQRSFNRRPGLREQENKSSVPVRRSGTCRYELRSFRCNSISDVIPAGSSSSDSTLNRKKDSMKKRNCEGESSSTVKGKKIIGSSQIGRNSGSRIGLSISDSRRSRNLPSHSDISTASVRTQKSNSGHARGRFTSQGNGNPVATCESSVIVPLSPHSDDLDASGISYHSSSETPFSCSSSYGRPGTSSEQLCDAMPVSPAEYDITHSLINWDGFQHYNMDGMAEVLLALERIEQDEELTDEQIILLENSLLLNGLNFYDHHRDMRMDIDNMSYEELLALEERMGTVSTALTEEALSECLKTSTYQSAPSDDVAENCEEDKDDIKCCICQEEYVIGDEVGSLQCKHRFHVICIQEWLRLKNWCPICKVSAALSNSSSLPH* 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g0102 534 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 442 525 IPR013083 -
Apr9g0102 534 Pfam Ring finger domain 479 521 IPR001841 -
Apr9g0102 534 SMART ring_2 480 520 IPR001841 -
Apr9g0102 534 MobiDBLite consensus disorder prediction 232 296 - -
Apr9g0102 534 MobiDBLite consensus disorder prediction 197 296 - -
Apr9g0102 534 ProSiteProfiles Zinc finger RING-type profile. 480 521 IPR001841 -
Apr9g0102 534 MobiDBLite consensus disorder prediction 19 180 - -
Apr9g0102 534 SUPERFAMILY RING/U-box 472 524 - -
Apr9g0102 534 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 1 525 IPR045191 GO:0061630
Apr9g0102 534 MobiDBLite consensus disorder prediction 136 161 - -
Apr9g0102 534 MobiDBLite consensus disorder prediction 212 228 - -
Apr9g0102 534 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL44-RELATED 1 525 - -
Apr9g0102 534 MobiDBLite consensus disorder prediction 197 211 - -
Apr9g0102 534 MobiDBLite consensus disorder prediction 59 113 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g0102 Apr-Chr9 1244979 1250269 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g0102 377 524 C3H Transcription Factor Family AT2G15530 43.624 2.37e-35 139
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g0102 - - gmx:100803211 723.005
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g0102 9 1244979 1250269 Apr9g0102 9 1244979 1250269 ECH
Apr9g0102 9 1244979 1250269 Apr5g1181 5 16259187 16270539 PCT