Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g0092 ATGTCTCGTGTTTATGTTGGTAACTTGGATTCAAGAGTGACTGAGAGAGACCTCGAAGACGAATTCCGCGTTTTCGGAGTTATTCGGAGTGTTTGGGTTGCACGGAGACCACCTGGTTATGCTTTCATTGACTTCGATGACCGCAGAGATGCACAGGATGCTATTCGAGAGTTAGATGGCAAGAATGGTTGGAGGGTTGAGCTTTCTCACAACTCCAGAGGTGGAGGTGGTGGTCGTGGTCGTTCTGGTGGCTCTGACTTGAAATGCTATGAGTGTGGTGAACCTGGTCATTTTGCTCGTGAATGTCGCTTGCGTGGTGGTTCAGGAAGACGCCGTAGCCGTAGTCCACCCCGATTTCGTAGGAGCCCAAGTTATGGGCGAAGGAGTTACAGTCCGCGCGGCCGGTCCCCAAGGCGTCGCAGTTTGTCACCTCGTGGACGCAGCTACAGCAGGTCACCTCCTTACCGTGGGCGTGAGGAGGTACCATATGCTAATGGAAATGGCCTTAGGGAACGTCGCCGAAGCAGAAGTTGA 534 0.53 MSRVYVGNLDSRVTERDLEDEFRVFGVIRSVWVARRPPGYAFIDFDDRRDAQDAIRELDGKNGWRVELSHNSRGGGGGRGRSGGSDLKCYECGEPGHFARECRLRGGSGRRRSRSPPRFRRSPSYGRRSYSPRGRSPRRRSLSPRGRSYSRSPPYRGREEVPYANGNGLRERRRSRS* 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g0092 177 SUPERFAMILY Retrovirus zinc finger-like domains 81 104 IPR036875 GO:0003676|GO:0008270
Apr9g0092 177 Gene3D - 1 73 IPR012677 -
Apr9g0092 177 SMART rrm1_1 3 69 IPR000504 GO:0003723
Apr9g0092 177 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR RSZ22A-LIKE ISOFORM X1 2 169 - -
Apr9g0092 177 Gene3D - 83 141 - -
Apr9g0092 177 MobiDBLite consensus disorder prediction 101 177 - -
Apr9g0092 177 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 2 73 IPR000504 GO:0003723
Apr9g0092 177 Pfam Zinc knuckle 88 103 IPR001878 GO:0003676|GO:0008270
Apr9g0092 177 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 2 169 - -
Apr9g0092 177 MobiDBLite consensus disorder prediction 66 87 - -
Apr9g0092 177 ProSiteProfiles Zinc finger CCHC-type profile. 88 103 IPR001878 GO:0003676|GO:0008270
Apr9g0092 177 CDD RRM_SRSF3_like 3 71 - -
Apr9g0092 177 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4 61 IPR000504 GO:0003723
Apr9g0092 177 SUPERFAMILY RNA-binding domain, RBD 3 83 IPR035979 GO:0003676
Apr9g0092 177 SMART c2hcfinal6 88 104 IPR001878 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g0092 Apr-Chr9 1145979 1150377 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g0092 4 84 Eukaryotic Initiation Factors Gene Family AT1G71770 34.483 4.04e-07 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g0092 K12896 - gmx:100796961 247.669
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g0092 9 1145979 1150377 Apr9g0092 9 1145979 1150377 ECH