Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g0045 ATGGACAGTGAACGGAATATCCCTCCTCCATCTCTTGGGCATGTTGATGGTGTTCAGAAAGTTAGAGCATTACATGGGAGGACGACTGGTCCGACAAGGCGTTCTACAAAAGGGCAATGGACACCGGAGGAGGATGATATCTTACGGAAGGCTGTTCAGCGGTTTAAAGGAAAAAATTGGAAAAAAATAGCGGAGTGTTTCAAGGATAGAACTGATGTGCAATGCCTACATAGATGGCAAAAAGTTTTAAATCCTGAACTTGTTAAAGGTCCATGGTCTAAAGAGGAAGATGAAGTTATTATTGAATTGGTGAACAAATTTGGGCCTAAAAAGTGGTCTTCTATTGCACAACATTTACCTGGACGTATTGGTAAGCAATGTCGAGAAAGGTGGCATAATCATCTTAATCCTACTATAAACAAGGAAGCATGGACACAAGAAGAGGAGTTGGCTCTAATACGAGCTCATCAAATTTTTGGGAACAAATGGGCTGAATTGTCAAAAGTCTTGCCTGGAAGGACAGACAATGCTATTAAAAATCACTGGAACAGTTCTGTCAAAAAGAAATTGGATTCTTACTTGGCATCAGGCTTGCTTACTCAGTTTGAATCTGTACCACATGTGGGAAATTCAAATCAGCCAACAAAGTTGCAGTGTTTTGCAGATGATAAAGGTCCTATGGGGACTGAAGGGGAGGAAGTTTCAGAGTGCAGCCAGGAGTCAGCTAATGCTGTTCACTTTCCATCTGGTAGAGGAGCCAGTAGTGTTGACTTAAAAACTGGAGAGGAATATAGGCCAAATGAAGAATGTAGTCTCGGAAAGGATCATAGTGTGAGTCAACTTCAAGCATCTTGTTCGGAGCCATATTACGTATCAATTGATGATGTTGCTATATGTATCCCAGATAATGCTGACCAAAAGGTTTGCACTTCTCAATTCATTGAGCAACAACACTTGCATGAACCTGGAAATTCCATAAGTGGGGATTGCCAGTTCAATTTACATTCCTTACCCAATATTTCACCAATGGACTTGGGACATGGATCTGTGCAGTTGCAAAGTGATTGTATAGCTTCTAGTGAAATCTGTGACATGGTGAATGTTCCATTTAAGACTTCAGTGGGGTTTGGTGTTCCAACATCCATGGGACCAGCATCTATGGATTCTCTTAAACCGGAGCACATGTTCATATCTGATGATGAATGTTGCAGAGTCCTTTTTTCAGACACAATGAATGATGGATGTTTTTCATCAGGAGATTACAATAAAGGAGAGGATATGGTTGAATTTTCTGGATGCACTTCATTTCTTTGTCAACCATCAAATATCCAGATATCTGAAAGTGGTGGAACCTCAACTCCAGAGCTAACTTGTCATCGGTGTTCTAATAATTTTAAAGGAACTTCATCCTCCCAATCTGTTCCCCCAGTACTTTCTGCTAGTGATGGTAGGCTAGTGTCTACTGCCAATGACAATCAATCATACGGGCCTGAGGATAACCAGTTTGTCTACAGAGTGCCTGCTAACTTCACTCATGTCAATGACATATCCATTTCTCCTTGTATTGATGAAATAGATAGTGCAGTGATGCAAGAGCAACGTAATATTCCAAAGGGTACTTCAAAATTTATTCCTGCAAGTAGTTTTAGCTGTGGATCAGATGCTAAACAAACATGTAATCCAACGGATGAAAAAACAAATGTTAATACAGAAAAGGAAACAGGATCTCTATGTTATGAGCCTCCCCGTTTTCCAAGCTTGGATATTCCTTTCTTCAGCTGCGATCTTGCACAATCTGGGAGTGATATGCAGCAAGAGTTTAGTCCTTTGGGTATCCGCCAGTTTATGATGTCTTCTATGAACTGTCTGACTCCTTTCAGGTTGTGGGACTCACCCTCTAGGGATGATAGTCCAGATGCATTGTTGAAAAGTGCAGCCAAAACCTTTGCAGGTACACCATCCATATTAAAGAAAAGAAACCGAGATTTGTTGTCGCCTCTTTCAGATAAAAGAATTGACAAGAAACTTGAGATTGACATGACATCTACCTTGACCAAAAATTTTTCCAGTTTGGATGTCATGTTTGATGACAATGAGACTAGGGAAGCAGGTATGCCTTCTCCATCTTCACTGCAAAAACAGAACACTAGTGCGTCCATTGAAAATGTTGATAAAGAAATTTGTAGACAAGCTCATAAAGGGGAACAAGTAGAGGAACCAATTAAATCTGCAATTTTGAATGAAGAAAACATTAAAAAAGATACTGTTGACAGTAATTCTAAGGATAATGTCAAGCAACAACCTCTTGATTCGAAGATGAAGCTTGCTGCTACTGCTGAGCAGCAACAACCTTCTGGAGTTTTGGTTGAGCATGATATGAATGACCTGTCATTGTATTCTCCTGATCAAGTTGGTTTAAAGTCAGACAAAAGTCTGAGTTCAAGTTCTAAAACACCCAAAAACTTGAACAATAGGAGCTTGGAAGAAGCTCCAAATTGTAGCGTCCCATTGAAATTATCTTCTGAAAATCCATGCTCAAGGGTTAAGTCTCCTTGTATTCGTGCAAAGGAGCATGAAAAACTTTCAGTTTCTGTTACTCGTGTACAGGCTACAGGAGAGAATTCAGGAGATCAAACCAGAAAGGATGGCAGTTTTGAACCATGTAGCATCTTTGGTGGAACACCTTTTAGGAAAAGCATTGAATCGCCTTCTGCATGGAAATCTCCTTGGTTCATCAACACTTTTCTGTCTAGCCCAGGACTTGGTACCGAAATTACAATTGAGGATTTTGGGTATTTCATTAGCCCAGGTGATAGAAGCTATGATGCCATTGGGTTGTTGAAACAAATTAGTGAACAAACAGCTGCCACATATGCCAATGCTCAGGAGGTTTTGGGAAATGAAACTCCTAAAGGGTTGCCAGAAGATGCCCCTGGAAACGACAAGGATGGGTTCCAGGAAAATAATGATCCTCCCAATCAGCCTGGGAACCATTGTCAGTTGGCTTCAAATGCTTTGATTGAGCGGCGCATACTTGACTTTAGTGAATGTGGAACACCGGGCAAGGAGGGCGATAACAGCAAGAGCGATAACAGCAAAGCCTCATCTGTGAGCTTCTCAAGCCCGTCGTCGTATTTGTTGAAGGGATGTAGATAG 3156 0.4094 MDSERNIPPPSLGHVDGVQKVRALHGRTTGPTRRSTKGQWTPEEDDILRKAVQRFKGKNWKKIAECFKDRTDVQCLHRWQKVLNPELVKGPWSKEEDEVIIELVNKFGPKKWSSIAQHLPGRIGKQCRERWHNHLNPTINKEAWTQEEELALIRAHQIFGNKWAELSKVLPGRTDNAIKNHWNSSVKKKLDSYLASGLLTQFESVPHVGNSNQPTKLQCFADDKGPMGTEGEEVSECSQESANAVHFPSGRGASSVDLKTGEEYRPNEECSLGKDHSVSQLQASCSEPYYVSIDDVAICIPDNADQKVCTSQFIEQQHLHEPGNSISGDCQFNLHSLPNISPMDLGHGSVQLQSDCIASSEICDMVNVPFKTSVGFGVPTSMGPASMDSLKPEHMFISDDECCRVLFSDTMNDGCFSSGDYNKGEDMVEFSGCTSFLCQPSNIQISESGGTSTPELTCHRCSNNFKGTSSSQSVPPVLSASDGRLVSTANDNQSYGPEDNQFVYRVPANFTHVNDISISPCIDEIDSAVMQEQRNIPKGTSKFIPASSFSCGSDAKQTCNPTDEKTNVNTEKETGSLCYEPPRFPSLDIPFFSCDLAQSGSDMQQEFSPLGIRQFMMSSMNCLTPFRLWDSPSRDDSPDALLKSAAKTFAGTPSILKKRNRDLLSPLSDKRIDKKLEIDMTSTLTKNFSSLDVMFDDNETREAGMPSPSSLQKQNTSASIENVDKEICRQAHKGEQVEEPIKSAILNEENIKKDTVDSNSKDNVKQQPLDSKMKLAATAEQQQPSGVLVEHDMNDLSLYSPDQVGLKSDKSLSSSSKTPKNLNNRSLEEAPNCSVPLKLSSENPCSRVKSPCIRAKEHEKLSVSVTRVQATGENSGDQTRKDGSFEPCSIFGGTPFRKSIESPSAWKSPWFINTFLSSPGLGTEITIEDFGYFISPGDRSYDAIGLLKQISEQTAATYANAQEVLGNETPKGLPEDAPGNDKDGFQENNDPPNQPGNHCQLASNALIERRILDFSECGTPGKEGDNSKSDNSKASSVSFSSPSSYLLKGCR* 1052
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g0045 1051 MobiDBLite consensus disorder prediction 1016 1051 - -
Apr9g0045 1051 MobiDBLite consensus disorder prediction 745 760 - -
Apr9g0045 1051 MobiDBLite consensus disorder prediction 1 43 - -
Apr9g0045 1051 SUPERFAMILY Homeodomain-like 86 182 IPR009057 -
Apr9g0045 1051 PANTHER TRANSCRIPTION REPRESSOR MYB5 5 1050 - -
Apr9g0045 1051 Gene3D - 89 140 - -
Apr9g0045 1051 SUPERFAMILY Homeodomain-like 33 89 IPR009057 -
Apr9g0045 1051 MobiDBLite consensus disorder prediction 699 768 - -
Apr9g0045 1051 Gene3D - 142 203 - -
Apr9g0045 1051 CDD SANT 143 183 IPR001005 -
Apr9g0045 1051 PANTHER MYB PROTEIN-RELATED 5 1050 - -
Apr9g0045 1051 ProSiteProfiles Myb-like domain profile. 136 186 IPR001005 -
Apr9g0045 1051 MobiDBLite consensus disorder prediction 964 999 - -
Apr9g0045 1051 MobiDBLite consensus disorder prediction 799 829 - -
Apr9g0045 1051 Pfam Myb-like DNA-binding domain 89 135 IPR001005 -
Apr9g0045 1051 Pfam Myb-like DNA-binding domain 37 83 IPR001005 -
Apr9g0045 1051 Pfam Myb-like DNA-binding domain 141 183 IPR001005 -
Apr9g0045 1051 MobiDBLite consensus disorder prediction 703 723 - -
Apr9g0045 1051 MobiDBLite consensus disorder prediction 725 739 - -
Apr9g0045 1051 ProSiteProfiles Myb-like domain profile. 32 83 IPR001005 -
Apr9g0045 1051 CDD SANT 40 83 IPR001005 -
Apr9g0045 1051 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 32 83 IPR017930 -
Apr9g0045 1051 MobiDBLite consensus disorder prediction 864 886 - -
Apr9g0045 1051 ProSiteProfiles Myb-like domain profile. 84 135 IPR001005 -
Apr9g0045 1051 SMART sant 140 188 IPR001005 -
Apr9g0045 1051 SMART sant 88 137 IPR001005 -
Apr9g0045 1051 SMART sant 36 85 IPR001005 -
Apr9g0045 1051 MobiDBLite consensus disorder prediction 1022 1045 - -
Apr9g0045 1051 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 84 139 IPR017930 -
Apr9g0045 1051 MobiDBLite consensus disorder prediction 864 882 - -
Apr9g0045 1051 CDD SANT 91 135 IPR001005 -
Apr9g0045 1051 MobiDBLite consensus disorder prediction 804 829 - -
Apr9g0045 1051 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 140 190 IPR017930 -
Apr9g0045 1051 Gene3D - 36 88 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g0045 Apr-Chr9 603136 617768 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g0045 1 1051 MYB Transcription Factor Family AT4G32730 43.121 0.0 707
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Apr9g0045 Myb_DNA-binding 4.6e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g0045 - K09420 aprc:113848458 2103.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g0045 9 603136 617768 Apr9g0045 9 603136 617768 ECH
Apr9g0045 9 603136 617768 Apr5g1130 5 15890316 15897646 PCT