Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g0040 ATGTGCAATTGCAACATCTTCTATATCTACCCTTTTGAGAAAACCAACTCGCTAGAGCTCATGATGGTTCTTTCTTTCATTTTTCATGTTGAGGCCCAAGACAGTGACACGGATACCATGCCAGATTTGTCCCGACCTGTTCATCCAAACAAGGTGGTTGTATTAGTGGCCCTCTCAATATTGTTCACCTTAACTTTTCTCTTACTCGCATATGTAAGATTTCGTAGAAACACTTCTGAACTTTTCCACAGAAGTAACCATCATTTACCAACTTTTCAAGCACTAACTCACACAAGGTCAAGGCTTTCAGGGATAGATAGAGAAGTGATTCAAACACTCCCATTTTTCAGGTTCTCTTCCCATAAGGGATCCAAACAAGGCCTTGAATGCACAGTTTGCCTTTCACAGTTTGAGGACACTGAGATTCTTAGACTGTTGCCAAAGTGCAAACATGCTTTCCACATGAACTGCATTGACAAGTGGCTTGAAAATCACTCTAATTGCCCTCTTTGCAGGAACAATGTTGACCCTTTAGACATCAAGAACTTCACCTATTCATTCAGCTCAAAGTTCCTAAGAATTCCTTCAAATTTATCTGAAGACACAACAAACCTTGAAATCTTTGTTCAGAGGGAACCTTCCCATAGAGGGTCTTCAGTTTCATCAAGATTTAACATTGGAAGCAGGTTTTGGAATTTGGGTAGGAGCAACAAAGAAGAAACTCTCATTGATCAAGAGGTTTGTGCAAATGAGAAACACGTGCACAAGTTCAATCACAAAATTGTGATCTCTGATGTTGTTACAAGGAGTAGGTGGAGTGATCTTAATTCTTCAGACATGTTATTATTGAACAGTGAGATGCTTCATGACATGTCAAGCACAAGATTTCGTGCCTCAAACAGTGAAAAGTTTTGTGAAAGTTCAAGGTTTCTTTCCACTACTTCTTTCAATGAGGATGAAAATTCATTTATGTCAATGAATCCTGCTAAGAAGAGATCTATGTCTGAGATTGCTCATGTTCCAAGGTTCATAGAAATGAACGAGTACAATGGAATGAAAGAAGGTATGGCATCAAGTGAGAACAATGGGAGGGAAGAGAGGCTGAGGAGGATTTGGTTGCCAATTGCTCAACGAACAGTGAAAAGGTTTTCAAGACAAGAAAGAAACTCGAGAGAATTAGATCACAAAAGTATGGCTTTAAATGTTTGA 1209 0.3912 MCNCNIFYIYPFEKTNSLELMMVLSFIFHVEAQDSDTDTMPDLSRPVHPNKVVVLVALSILFTLTFLLLAYVRFRRNTSELFHRSNHHLPTFQALTHTRSRLSGIDREVIQTLPFFRFSSHKGSKQGLECTVCLSQFEDTEILRLLPKCKHAFHMNCIDKWLENHSNCPLCRNNVDPLDIKNFTYSFSSKFLRIPSNLSEDTTNLEIFVQREPSHRGSSVSSRFNIGSRFWNLGRSNKEETLIDQEVCANEKHVHKFNHKIVISDVVTRSRWSDLNSSDMLLLNSEMLHDMSSTRFRASNSEKFCESSRFLSTTSFNEDENSFMSMNPAKKRSMSEIAHVPRFIEMNEYNGMKEGMASSENNGREERLRRIWLPIAQRTVKRFSRQERNSRELDHKSMALNV* 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g0040 402 SUPERFAMILY RING/U-box 124 177 - -
Apr9g0040 402 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 104 179 IPR013083 -
Apr9g0040 402 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 306 396 - -
Apr9g0040 402 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 23 304 - -
Apr9g0040 402 ProSiteProfiles Zinc finger RING-type profile. 130 172 IPR001841 -
Apr9g0040 402 PANTHER RING-H2 FINGER PROTEIN ATL4J 306 396 - -
Apr9g0040 402 PANTHER RING-H2 FINGER PROTEIN ATL4J 23 304 - -
Apr9g0040 402 Pfam Ring finger domain 129 172 IPR001841 -
Apr9g0040 402 CDD RING-H2_PA-TM-RING 129 172 - -
Apr9g0040 402 SMART ring_2 130 171 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g0040 Apr-Chr9 553839 555047 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g0040 29 402 C3H Transcription Factor Family AT2G20030 39.846 1.67e-74 235
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g0040 K10664 - gmx:100803881 502.286