Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g0038 ATGAGAGTTTCACCCGATGAGGTAGAGAGTAACTCAAACTCATCATCATCGTCCTCAGATCCTAAAACTGGACCAAAGGTGGAGAAGTGTAACCGCGACTCGAACAAGCACCCAGTGTACAGAGGGGTCAGAATGAGAAATTGGGGGAAATGGGTGTCTGAAATCCGCGAGCCAAGGAAGAAATCACGCATATGGTTAGGCACATTCCCGACGCCGGAAATGGCGGCGAGGGCGCATGACGTGGCAGCGTTGAACATAAAGGGAGCAAACGCGATCCTCAACTTCCCCGAACTCGCGACATCGCTACCTCGACCTGTTTCGCTGGCCCCACGAGACGTGCAAGCGGCTGCAGCCAAAGCGGCTCACATGGACTTGCCTAGTTCACCGTCCAAAACGACGACGTCGTCTTCCTCTTCGTCGTCGGCTTCCACTACGGACTTATCTACTGCGTCTGAGGAATTGTGTGAGATCATTGAGTTGCCGAGGTTGGAAACAAGTTATGAGTTCGGGAATGAGTTTGTGTTCGTGGATTCCCAGGACACGTGGATGTTTCAGCCTCCATTGCCGTGGTTGCAAACTTCACATGATGGTTCTGATGCTCATGAGTTTGCTGTGACTGAGAGTGGTGGGGTTGTGAGTTCTGGTTTTGAGAGCTTTCTGTGGAATTACTGA 672 0.5164 MRVSPDEVESNSNSSSSSSDPKTGPKVEKCNRDSNKHPVYRGVRMRNWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDVAALNIKGANAILNFPELATSLPRPVSLAPRDVQAAAAKAAHMDLPSSPSKTTTSSSSSSSASTTDLSTASEELCEIIELPRLETSYEFGNEFVFVDSQDTWMFQPPLPWLQTSHDGSDAHEFAVTESGGVVSSGFESFLWNY* 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g0038 223 MobiDBLite consensus disorder prediction 126 148 - -
Apr9g0038 223 PRINTS Ethylene responsive element binding protein signature 40 51 IPR001471 GO:0003700|GO:0006355
Apr9g0038 223 PRINTS Ethylene responsive element binding protein signature 62 78 IPR001471 GO:0003700|GO:0006355
Apr9g0038 223 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 3-LIKE 9 222 - -
Apr9g0038 223 Pfam AP2 domain 38 88 IPR001471 GO:0003700|GO:0006355
Apr9g0038 223 MobiDBLite consensus disorder prediction 1 37 - -
Apr9g0038 223 SMART rav1_2 39 102 IPR001471 GO:0003700|GO:0006355
Apr9g0038 223 Gene3D AP2/ERF domain 39 97 IPR036955 GO:0003700|GO:0006355
Apr9g0038 223 MobiDBLite consensus disorder prediction 1 24 - -
Apr9g0038 223 SUPERFAMILY DNA-binding domain 39 97 IPR016177 GO:0003677
Apr9g0038 223 CDD AP2 40 98 IPR001471 GO:0003700|GO:0006355
Apr9g0038 223 MobiDBLite consensus disorder prediction 117 148 - -
Apr9g0038 223 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 9 222 - -
Apr9g0038 223 ProSiteProfiles AP2/ERF domain profile. 39 96 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g0038 Apr-Chr9 501000 501718 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g0038 10 196 AP2-EREBP Transcription Factor Family AT5G11590 63.000 1.82e-72 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Apr9g0038 AP2 1.4e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g0038 K09286 - gmx:100305349 293.508
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g0038 9 501000 501718 Apr9g0038 9 501000 501718 ECH