Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g0034 ATGGAAGGACCCCAGTTTTTCCAAAGCACCTTTTCCTCGCAATTCCCCTGCGACAACAAGACCAATAACGCCGACCAATTCATCGTTGAGGACCTCCTAGATTTCTCCAACGACGACGCTATCATTAGCGACGCCACCTTCCACGACTCTGTCCCCGGAAACTCCACCGATTCTTCCACCTTCACCGCCGTTGAAAGCTGCAATTCCTCCTCCTTCTCCGGCTCCGACCCCAACACCCTTGCCGACGTCGGTTGCCGGAATCTCTCCGACGAGCATTTCTCCGGTGACCTATGCGTTCCGTATGATGATTTAGCGGAGCTGGAATGGCTTTCGAATTTTGTGGAGGAATCCTTTTCAAGCGAGGACCTGCAGAAGTTGCAGCGGATATCAGGAATCAAGGCGGGAAACGACGACGTATCAGAGGCCCGTGAGTTCCATTCCGAGCCCAACCGAAACAGCCCAATATTCAACCCAGAAGTGTCGGTTCCAGCCAAGGCGCGCAGCAAGAGGTCCCGCGGGCCCCCATGCAACTGGACCTCACGCCTTCTCGTCCTCTCCCCAACGTCATCGTCTTCGGAGCCCGACGTCGTCGTTCCAACCCCCGCTCCACCCGTTCCCGTCACCACCAAAAAGCACGCAAAGGCCACTCCGAGGAAGAAGGACAGCGGCGACGGCAGTGGCGGAGACGGGCGCAAGTGTTTGCATTGCGCTACGGACAAGACTCCACAGTGGCGGACCGGGCCCATGGGCCCGAAGACCCTCTGCAACGCTTGCGGCGTGAGGTACAAGTCGGGGCGGTTGGTGCCCGAGTACAGGCCCGCAGCAAGCCCAACGTTCGTGCTGACAAAGCACTCGAACTCGCATCGCAAGGTGCTGGAGCTGCGAAGGCAGAAGGAGATGGTGCGGGCCCAGCAGCACCAGCCACAGCAGTTCCTACCACACCATCATCAGAACATGATGTTTGACGTATCCAACGGTGAGGATTACTTGATCCACCAACACGTGGGGCCCGATTTCAGGCAGCTGATCTAG 1032 0.5795 MEGPQFFQSTFSSQFPCDNKTNNADQFIVEDLLDFSNDDAIISDATFHDSVPGNSTDSSTFTAVESCNSSSFSGSDPNTLADVGCRNLSDEHFSGDLCVPYDDLAELEWLSNFVEESFSSEDLQKLQRISGIKAGNDDVSEAREFHSEPNRNSPIFNPEVSVPAKARSKRSRGPPCNWTSRLLVLSPTSSSSEPDVVVPTPAPPVPVTTKKHAKATPRKKDSGDGSGGDGRKCLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLTKHSNSHRKVLELRRQKEMVRAQQHQPQQFLPHHHQNMMFDVSNGEDYLIHQHVGPDFRQLI* 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g0034 343 PIRSF Txn_fac_GATA_plant 8 323 IPR016679 GO:0003677|GO:0005634|GO:0045893
Apr9g0034 343 MobiDBLite consensus disorder prediction 187 231 - -
Apr9g0034 343 ProSiteProfiles GATA-type zinc finger domain profile. 227 263 IPR000679 GO:0006355|GO:0043565
Apr9g0034 343 Pfam GATA zinc finger 233 266 IPR000679 GO:0006355|GO:0043565
Apr9g0034 343 ProSitePatterns GATA-type zinc finger domain. 233 258 IPR000679 GO:0006355|GO:0043565
Apr9g0034 343 Gene3D - 228 277 IPR013088 GO:0006355|GO:0008270
Apr9g0034 343 SMART GATA_3 227 277 IPR000679 GO:0006355|GO:0043565
Apr9g0034 343 CDD ZnF_GATA 232 279 IPR000679 GO:0006355|GO:0043565
Apr9g0034 343 PANTHER GATA TRANSCRIPTION FACTOR 1 343 - -
Apr9g0034 343 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 229 291 - -
Apr9g0034 343 MobiDBLite consensus disorder prediction 140 175 - -
Apr9g0034 343 PANTHER GATA TRANSCRIPTION FACTOR 1 343 - -
Apr9g0034 343 MobiDBLite consensus disorder prediction 217 231 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g0034 Apr-Chr9 445839 447609 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g0034 27 343 C2C2-Gata Transcription Factor Family AT5G25830 53.731 3.22e-96 287
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Apr9g0034 GATA 3.1e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g0034 - - gmx:100784144 490.345
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g0034 9 445839 447609 Apr9g0034 9 445839 447609 ECH