Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g0019 ATGGGGGGTTTATCAGAGTCGAAGATCCTCCAAGAACTGGTTCTGTACGCTGCAAGCGCAGCACTGAGTTGCTTGGTCTTGTTCGCTGGTCTCCGTCAATTTGACCCAACCCGCGAAGCATCGAAGAAGGCCCTTCAACACAAGAAGGAGATTGCCAAACGCCTTGGTCGCCCCCTCGTTCAAACTAACCCTTACGAGGATGTCATAGCGTGCGATGTTATTAATCCTGACAACATTGATGTGGAGTTCAACTCTATTGGGGGACTGGAAACTATAAAGCAAGCTTTGTTTGAGCTTGTTATTCTGCCTCTAAAAAGACCTGACTTGTTTTCTTATGGTAAGCTTCTTGGACCACAAAAGGGTGTGCTGTTGTATGGACCTCCTGGCACAGGGAAGACCATGCTTGCCAAAGCTATTGCTAAGGAATCTGGAGCAGTTTTCATCAATGTGAGGATATCAAACCTGATGAGCAAGTGGTTTGGTGATGCCCAAAAACTTGTGGCTGCTGTATTTAGCCTAGCTCATAAGCTCCAGCCTGCAATCATATTCATTGATGAAGTTGACAGTTTTTTGGGTCAGCGTCGCACAACAGATCACGAGGCTTTGTTAAACATGAAAACTGAATTCATGGCTTTATGGGATGGCTTTACAACTGATCAGAATGCTCAGGTTATGGTCCTTGCTGCAACTAATCGTCCTTCAGAACTTGATGAAGCAATACTTCGACGTCTTCCTCAAGCGTTTGAAATCGGCATGCCACATCAAAAGGAGAGGGCTGACATATTGAAGGTTATCTTGAAGGGTGAGAGGGTTGAAGAAAACATTGACTTTGACCACATAGCTTACTTATGTGAGGGTTACACTGGTTCAGATATATTTGACCTATGCAAGAAAGCTGCTTATTTTCCAATTAGAGAACTGCTGGATGAAGAAAAGAAAGGGAAAAGTTCTTCTGCACCTAGACCATTGTCACAGACAGATTTAGAGAAGGTCCTTGCCACTTCACGGAACACAAAGGTTGCTGCAAGTGAATACAGTGGATTAAGTGCAGATGCACTAAGATGGACAGGGCACAGGGAACCAGGTGACTATCAGGTTCAAGCTGCAATTAGTGAACTCTCTAAGTTTGTTTCTCACATGATTAACCGTCAGCCAGATGCCAAGGATCTTTAA 1173 0.4442 MGGLSESKILQELVLYAASAALSCLVLFAGLRQFDPTREASKKALQHKKEIAKRLGRPLVQTNPYEDVIACDVINPDNIDVEFNSIGGLETIKQALFELVILPLKRPDLFSYGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMSKWFGDAQKLVAAVFSLAHKLQPAIIFIDEVDSFLGQRRTTDHEALLNMKTEFMALWDGFTTDQNAQVMVLAATNRPSELDEAILRRLPQAFEIGMPHQKERADILKVILKGERVEENIDFDHIAYLCEGYTGSDIFDLCKKAAYFPIRELLDEEKKGKSSSAPRPLSQTDLEKVLATSRNTKVAASEYSGLSADALRWTGHREPGDYQVQAAISELSKFVSHMINRQPDAKDL* 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g0019 390 CDD AAA 116 251 - -
Apr9g0019 390 ProSitePatterns AAA-protein family signature. 224 243 IPR003960 GO:0005524|GO:0016887
Apr9g0019 390 Pfam ATPase family associated with various cellular activities (AAA) 122 251 IPR003959 GO:0005524|GO:0016887
Apr9g0019 390 PANTHER ATPASE FAMILY AAA DOMAIN-CONTAINING PROTEIN 1-LIKE 5 343 - -
Apr9g0019 390 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 5 343 - -
Apr9g0019 390 Gene3D - 80 337 IPR027417 -
Apr9g0019 390 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 81 310 IPR027417 -
Apr9g0019 390 SMART AAA_5 118 258 IPR003593 -
Apr9g0019 390 Gene3D - 253 333 - -
Apr9g0019 390 Pfam AAA+ lid domain 274 310 IPR041569 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g0019 Apr-Chr9 284726 290376 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g0019 39 325 Calmodulin-binding Proteins AT3G56690 33.677 1.82e-40 151
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g0019 K22530 - gmx:100791694 704.901