Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g0006 ATGGGGAAAAAGGGAGGCAGTTGGTTCTCGTCGGTGAAGAAAGTTTTCAAGTCATCTTCCAGAAACTCGCCCGTGCCACCGTCAGTGCCTGTGCCGGAGAAGGTGAAGGACAACACACAGAAATTACAACAGCATGAAGTGGCAGAGGTGGTGTCTTTTGAGCATTTTCCAGCAGAGAGTTCTCCAGATAATGAAGAGAGCATCACATCAACGCCAGTGACTGAAGATAGAAGTCGTGCCATTGCCGTTGCAGCAGCAACTGCCGCAGCTGCTGAAGCTGCTGTGGTGGCTGCTCAAGCAGCTGCTAGAGTTGTGAGATTGGCAGGGTATGGAAGCCACTCCAAGGAAGAAAGAGCAGCAACACTGATACAATCACACTACAGAGGCTACCTAGCTCGACGTGCACTGCGAGCATTGAAGGGATTAGTGAGGCTGCAAGCACTGGTGAGGGGACATAATGTGAGGAAGCAAGCGCAGATGACAATGCGGTGTATGCAAGCATTAGTGAGAGTGCAAGCACGCGTAAGAGCTCGCAGACTGCAATTGACTCGGGAGGATGAGGAAACAGAGTATGAGCAAAGAGACAATGTGAAGAAACAAGAACCTACTAAGCCCATGAGCCCCATCAGAAGGTTTGACAATAATGGTTGGGACAATAGGCGCCAAAGTAGCCAGAAAATTAAGGAAAACGATTTGAGGAAGCACGAAGCTGCCCTGAAGAGGGAGAGAGCTCTTGCATACGCCTTCAACTATCAGCAGCAGAAGCAATATTTGCAAGGAGACTCGAACGGTGATGATGATGCTGGAACCCATTACCCCAATGCGCGTGAAAAAGCCCAATGGGGTTGGAACTGGTTGGAGCGTTGGATGTCATCCCAACCAAATAATGTCAAGCACTTAGGGCCACGTGAGACCTCGTATATGACACTGGCTTCTACAACATCAACTACCACAGATAACATGTCTGAGAAGACTGTAGAAATGGACATGGTTGCAACTCCAGGCCCAAGCAACGTCAAAAACATCAGCCCCATGAACCATGATTTTATTGATTCAAGCCCAGTTTCCAGTAGACACTATCAGAGACCACTTAGCCCAAATAGACCAAGCTATATGGCCCCAACCCAGTCTGCAAAAGCCAAGGTTCGGGGCCAAGGCCCAACTAAGCCACGGCTTTCAACTGGGCCTCAGTGGAACTTCTCAACTAAGGGAGCCTCCACATGTGATTCGTCAAGCTCAGGTGGAGGAATTGCCGCCTACCAATTTCCAAGGAGCCCAAGCCCAAAAATCAATGGTATTCGTTCACAGTCTAGACGGATTGTGGGTAGCAGTCCAGATTACATTGAAGATTGGGCCCTTCCTCTTGGAGCCCATGGTTGGACATAG 1386 0.4942 MGKKGGSWFSSVKKVFKSSSRNSPVPPSVPVPEKVKDNTQKLQQHEVAEVVSFEHFPAESSPDNEESITSTPVTEDRSRAIAVAAATAAAAEAAVVAAQAAARVVRLAGYGSHSKEERAATLIQSHYRGYLARRALRALKGLVRLQALVRGHNVRKQAQMTMRCMQALVRVQARVRARRLQLTREDEETEYEQRDNVKKQEPTKPMSPIRRFDNNGWDNRRQSSQKIKENDLRKHEAALKRERALAYAFNYQQQKQYLQGDSNGDDDAGTHYPNAREKAQWGWNWLERWMSSQPNNVKHLGPRETSYMTLASTTSTTTDNMSEKTVEMDMVATPGPSNVKNISPMNHDFIDSSPVSSRHYQRPLSPNRPSYMAPTQSAKAKVRGQGPTKPRLSTGPQWNFSTKGASTCDSSSSGGGIAAYQFPRSPSPKINGIRSQSRRIVGSSPDYIEDWALPLGAHGWT* 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g0006 461 PANTHER IQ-DOMAIN 21 1 443 - -
Apr9g0006 461 MobiDBLite consensus disorder prediction 185 206 - -
Apr9g0006 461 MobiDBLite consensus disorder prediction 354 373 - -
Apr9g0006 461 MobiDBLite consensus disorder prediction 390 414 - -
Apr9g0006 461 Pfam Protein of unknown function (DUF4005) 352 405 IPR025064 -
Apr9g0006 461 PANTHER IQ-DOMAIN 5-RELATED 1 443 - -
Apr9g0006 461 ProSiteProfiles IQ motif profile. 140 167 IPR000048 GO:0005515
Apr9g0006 461 Gene3D - 113 164 - -
Apr9g0006 461 ProSiteProfiles IQ motif profile. 116 144 IPR000048 GO:0005515
Apr9g0006 461 MobiDBLite consensus disorder prediction 55 74 - -
Apr9g0006 461 MobiDBLite consensus disorder prediction 185 229 - -
Apr9g0006 461 Pfam IQ calmodulin-binding motif 143 158 IPR000048 GO:0005515
Apr9g0006 461 Pfam IQ calmodulin-binding motif 117 137 IPR000048 GO:0005515
Apr9g0006 461 MobiDBLite consensus disorder prediction 380 414 - -
Apr9g0006 461 MobiDBLite consensus disorder prediction 214 229 - -
Apr9g0006 461 MobiDBLite consensus disorder prediction 15 42 - -
Apr9g0006 461 SMART iq_5 138 159 IPR000048 GO:0005515
Apr9g0006 461 SMART iq_5 115 137 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g0006 Apr-Chr9 180000 185104 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g0006 1 429 IQD Protein Family AT3G49260 48.578 2.99e-98 301
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g0006 - - gmx:100798026 598.201