Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g0002 ATGGAATATGGAAGGCTTGGACCCGCTGACCCTGGTGGCTCCTCACGCCGCTCCACCACTCCTCTAACCAAATCAACCCCCTCTTCTTCAAACAGTAAAAAGAAGCTCATCATAATTTCCACTCTCGCCGCCGTCTTAATCGTCGCCTCTGCTGTCTCCGCCGCCCTCATCACCGTCATCCGCTCCCGTGCTTCCGGGAACCAAAACGCACCGGACCTCACCCGCAAGCCCACACAGGCAATTTCCCGAACCTGCAGCAAGACTCGTTTCCCTACCCTATGCATCAACTCCCTCCTTGACTTCCCCGGCTCCACCACTGCCTCTGAGCAAGATCTCGTCCACATCTCCTTCAACATGACACTACGCCACATAAGCCACGCATTCTACGCCTCCACCGGCATTTCGTTTGCGGCCACGGACCCAAAAGTCCATGCGGCATACGAGGATTGTCTCGAGCTCCTTGAGGAGTCTATGGACGCACTTTCGCGGTCCCTTGACTCCGTCTTGCCTCCTTCGGCGCCATCCAGCAGCGGCGAAATTAAACCCGCCGCCACTGGATCCTCCGAAGACGTGTTGACGTGGCTTAGCGCCGCCCTCACTAATCAAGACACTTGTGCGGAGGGGTTCGAGGACACGAGCGGGACCGTGAAGAACCAGATGGTGAATAACTTGAAGGACTTGTCTGAACTCGTGAGTAACTGTCTCGCGATTTTCTCGGCGAGTGCAAGTGGCGATTTCTCGGGGGTCCCTATACAAAACAAGAGACGGCTAATGGAAGAGGACAAGCATGATCATTTTAACGGCGATATCTCGGGAAAATTTCCGAGTTGGTTGAATAAACGAGATAGGAGATTGTTGAATTTACCAGTGTCGGCAATTCAAGCAGATATAGTCGTGTCCAAAAACGGTAACGGAACGGTAAAGACAATTGCTGAGGCGATAAAGAAAGCGCCAGAGCATAGTAAACGCCGGTTCATAATCTACGTGAGGGCAGGAAGGTATGAGGAGAATAGTTTAAAGGTTGGGAAAAAGAAAACCAATGTTATGTTGATAGGAGATGGGAAGGGCAAAACTGTCATTACAGGAAAGAAGAATGTGGCAGATGGCATGACCACATTCCACTCTGCATCCTTCGCTGCTAGTGGTTCTGGATTCATTGCACGAGACATCACATTCAAGAACTATGCGGGACCGGAAAAGCACCAAGCAGTGGCGCTCCGTGTTGGAGCCGACCACGCGGTGGTGTACCGTTGCAACATTTTGGGGTATCAAGACTCATGCTATGTACACTCTAACCGTCAATTCTTCCGTGAATGCGACATTTATGGCACTGTGGACTTCATATTTGGCAATGCCGCAGTGGTTTTTCAAAAGTGCAACATTTATGCTCGTAAGCCCATGGCCCAACAGAAGAACACAATCACGGCCCAAAGTAGGAAAGACCCGAATCAGAACACGGGTATATCCATCCACGATTGCCGGATTCTACCCGCCCCGGATCTCACCCCGGTAAAGGACAGCATCCCCACCTATTTAGGCCGTCCGTGGAAACAGTACTCTAGGACGGTGTACTTGTTATCTTACATTGGTGACCACATACATCCTCAAGGATGGTTGGAGTGGAATGGGGACTTTGCTTTGGACACATTGTATTATGGTGAGTACATGAATTTTGGGCCGGGTGCAGCCGTAGGGAATCGGGTTAAATGGCCGGGGTACCGGGTCATTACTTCTACCGTGGAGGCAAATCGGTTCACGGTGGCCCAGTTTATATCCGGGTCGGCATGGTTACCATCCACTGGAGTGGCGTTTCTGGCCGGGTTATCCACCTAA 1833 0.515 MEYGRLGPADPGGSSRRSTTPLTKSTPSSSNSKKKLIIISTLAAVLIVASAVSAALITVIRSRASGNQNAPDLTRKPTQAISRTCSKTRFPTLCINSLLDFPGSTTASEQDLVHISFNMTLRHISHAFYASTGISFAATDPKVHAAYEDCLELLEESMDALSRSLDSVLPPSAPSSSGEIKPAATGSSEDVLTWLSAALTNQDTCAEGFEDTSGTVKNQMVNNLKDLSELVSNCLAIFSASASGDFSGVPIQNKRRLMEEDKHDHFNGDISGKFPSWLNKRDRRLLNLPVSAIQADIVVSKNGNGTVKTIAEAIKKAPEHSKRRFIIYVRAGRYEENSLKVGKKKTNVMLIGDGKGKTVITGKKNVADGMTTFHSASFAASGSGFIARDITFKNYAGPEKHQAVALRVGADHAVVYRCNILGYQDSCYVHSNRQFFRECDIYGTVDFIFGNAAVVFQKCNIYARKPMAQQKNTITAQSRKDPNQNTGISIHDCRILPAPDLTPVKDSIPTYLGRPWKQYSRTVYLLSYIGDHIHPQGWLEWNGDFALDTLYYGEYMNFGPGAAVGNRVKWPGYRVITSTVEANRFTVAQFISGSAWLPSTGVAFLAGLST* 611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g0002 610 MobiDBLite consensus disorder prediction 1 30 - -
Apr9g0002 610 MobiDBLite consensus disorder prediction 165 184 - -
Apr9g0002 610 MobiDBLite consensus disorder prediction 168 184 - -
Apr9g0002 610 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 79 239 IPR035513 -
Apr9g0002 610 Pfam Pectinesterase 296 593 IPR000070 GO:0030599|GO:0042545
Apr9g0002 610 ProSitePatterns Pectinesterase signature 2. 441 450 IPR033131 -
Apr9g0002 610 Gene3D - 290 608 IPR012334 -
Apr9g0002 610 Pfam Plant invertase/pectin methylesterase inhibitor 80 237 IPR006501 GO:0004857
Apr9g0002 610 PANTHER PECTINESTERASE 25 608 - -
Apr9g0002 610 SUPERFAMILY Pectin lyase-like 291 607 IPR011050 -
Apr9g0002 610 MobiDBLite consensus disorder prediction 13 30 - -
Apr9g0002 610 Gene3D Invertase/pectin methylesterase inhibitor family protein 78 241 IPR035513 -
Apr9g0002 610 CDD PMEI-like_3 85 240 - -
Apr9g0002 610 PANTHER PECTINESTERASE 25 608 - -
Apr9g0002 610 SMART PMEI_2 76 237 IPR006501 GO:0004857
Apr9g0002 610 TIGRFAM PME_inhib: pectinesterase inhibitor domain 60 238 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g0002 Apr-Chr9 103936 107910 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g0002 1 609 Carbohydrate Esterase AT5G53370 62.418 0.0 790
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g0002 - - gmx:106796002 1019.22