Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g2815 ATGGCGGCTTCATCTGCAATTACTACGCTAAGGCTGGCAAATATTCCAGAAAGCAGAGGCAGAGTGGGAGCTTTGAACCCTAACACTAACCCTAAGTTTAGTGGTGCTGTGGGGGGGCTTGGGTTTGGGTTTGGGTTTGGTGTTTGTTCTCCACAGCCACTGTCAGTGAGTGTGGGACAGAGAAAAGAAAGCGTCCTGCTCCTTCCGGGTACGGGTAGGAGTAGGGTAAGGGCGAGTTCTGCTTCTGAGGAGCCGAGTGTGCAGTCAAAAGTGACTCAGAAAGTTTACTTCGACATAAGCATTGGAAATCCAGTTGGGAAGCTCGCGGGACGGATCGTCATTGGACTCTATGGTGACGATGTACCCCAAACATCAGAGAACTTTCGTGCCCTTTGTACTGGCGAGAAGGGCTTCGGCTACAAGGGCTCCACCTTCCATCGCGTCATCAAGGATTTCATGATTCAAGGAGGCGACTTCGACAAAGGAAATGGAACTGGAGGCAAAAGCATATATGGTCGTACTTTCAAAGATGAGAATTTTAAATTGTCTCATACTGGACCAGGAGTTGTTAGCATGGCAAATGCAGGTCCCAACACAAATGGGAGCCAGTTTTTCATATGCACTGTGAAGACACCATGGCTGGATCAGAGGCATGTTGTATTTGGCCAAGTTTTGGAAGGCATGGACATTGTTAGGTTGATCGAATCTCAGGATACAGATAGGGGTGACCGTCCTAGAAAGAAGGCTACCAGCTGGTCGCTGTAG 765 0.4889 MAASSAITTLRLANIPESRGRVGALNPNTNPKFSGAVGGLGFGFGFGVCSPQPLSVSVGQRKESVLLLPGTGRSRVRASSASEEPSVQSKVTQKVYFDISIGNPVGKLAGRIVIGLYGDDVPQTSENFRALCTGEKGFGYKGSTFHRVIKDFMIQGGDFDKGNGTGGKSIYGRTFKDENFKLSHTGPGVVSMANAGPNTNGSQFFICTVKTPWLDQRHVVFGQVLEGMDIVRLIESQDTDRGDRPRKKATSWSL* 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g2815 254 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 140 157 IPR020892 GO:0003755|GO:0006457
Apr8g2815 254 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 106 254 IPR002130 GO:0000413|GO:0003755
Apr8g2815 254 SUPERFAMILY Cyclophilin-like 87 250 IPR029000 -
Apr8g2815 254 Gene3D - 79 252 IPR029000 -
Apr8g2815 254 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 116 131 IPR002130 GO:0000413|GO:0003755
Apr8g2815 254 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 145 157 IPR002130 GO:0000413|GO:0003755
Apr8g2815 254 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 188 203 IPR002130 GO:0000413|GO:0003755
Apr8g2815 254 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 203 215 IPR002130 GO:0000413|GO:0003755
Apr8g2815 254 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 216 231 IPR002130 GO:0000413|GO:0003755
Apr8g2815 254 CDD cyclophilin_ABH_like 94 250 - -
Apr8g2815 254 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 107 248 IPR002130 GO:0000413|GO:0003755
Apr8g2815 254 PANTHER PHOTOSYNTHETIC NDH SUBUNIT OF LUMENAL LOCATION 5, CHLOROPLASTIC 69 249 - -
Apr8g2815 254 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 69 249 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g2815 Apr-Chr8 37452417 37458678 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g2815 110 245 U-box Gene Family AT5G67530 50.365 3.36e-34 127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g2815 K03768 - gmx:100777088 348.591