Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g2804 ATGTACCCCTCTTCCTCCTCCTCCTCCCACTCCCACACCTCCGTCAGCCAGGCGGGTGCCGGAGTGGGGGTTGGCCTCACCCGCTACGGCTCTGCTCCGGGCTCTCTCCTCACCAGCACGGTCGAGGCCGTTATTGGCCCTTACTATTCGGGAGACTCTTCCGAGTCAAACTGCAAGGACCAGGGGCATGGATCTTCCTCTTACGACAACCACGCCTTCGGATCCGCCTTGCTCCGTCAGAAAAGCACTCCCGCCGCTTTTCTCTCTCATCTCGCCGCCACCACTCCCAATCACAGCCACAGCCACAGCCACAACGCGGGCTTCACGATCACCCGGGGCAGCTCTCATTCCGCAAGGTTGAAGTCTCAATTGAGCTTCACGGGTCATTGCCAAGAATCTGAGAACAGCAACAATGTCGTCGTTGGGGTTGGGGACCCCGCCGCCTTCGCGTGGGACAGTTCCACTTCCATTGCCTTTTCTGCCCCCCCAACCAAGCGTTCCAAAAATGGCAACGATCCCTCCGACATTCTGCATTGTCTCACTGCCTTGGAATCTCAGTTTAGTCTCCCACAAACGACTCTGGAGATGGCAACAGTGGAGAAGCTATTGCATATTCCTGAAGATTCCGTCCCTTGTAAAATCCGCGCCAAGCGAGGTTGCGCTACTCATCCGCGTAGCATTGCAGAGAGGGAGAGAAGAACAAGAATAAGTGGCAAGCTCAAGAAATTACAGGACCTTGTGCCTAATATGGATAAGCAAACAAGCTATGCAGACATGCTGGATTTGGCCGTTCAACATATTAAAGGTCTTCAAAGTCAGGTTCAGAAGCTTCACAAAGAACTTGAGAATTGCACTTGCGGATGCAAACAAAGCAAATAG 879 0.537 MYPSSSSSSHSHTSVSQAGAGVGVGLTRYGSAPGSLLTSTVEAVIGPYYSGDSSESNCKDQGHGSSSYDNHAFGSALLRQKSTPAAFLSHLAATTPNHSHSHSHNAGFTITRGSSHSARLKSQLSFTGHCQESENSNNVVVGVGDPAAFAWDSSTSIAFSAPPTKRSKNGNDPSDILHCLTALESQFSLPQTTLEMATVEKLLHIPEDSVPCKIRAKRGCATHPRSIAERERRTRISGKLKKLQDLVPNMDKQTSYADMLDLAVQHIKGLQSQVQKLHKELENCTCGCKQSK* 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g2804 292 Coils Coil 260 280 - -
Apr8g2804 292 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 25 285 - -
Apr8g2804 292 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 223 285 IPR036638 GO:0046983
Apr8g2804 292 PANTHER TRANSCRIPTION FACTOR BHLH129 25 285 - -
Apr8g2804 292 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 220 270 IPR011598 GO:0046983
Apr8g2804 292 SMART finulus 226 276 IPR011598 GO:0046983
Apr8g2804 292 Gene3D - 221 291 IPR036638 GO:0046983
Apr8g2804 292 Pfam Helix-loop-helix DNA-binding domain 225 271 IPR011598 GO:0046983
Apr8g2804 292 CDD bHLH_AtbHLH_like 225 277 IPR045239 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g2804 Apr-Chr8 37369087 37371897 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g2804 77 290 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G05805 54.274 7.05e-68 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Apr8g2804 HLH 4.1e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g2804 - - vra:106771988 400.208