Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g2798 ATGGATCGTAAGAGAGCAAGGCCTGAAGCTAACTTCAATGGTAATGGCGGCGCCAAGAAATATCGCCCAGAAACGGAGTCCTTTCCAAGTGGTTTAGGAAGCAAATCGAAGCCATGCACAAAGTTTTTCAGCACCTCTGGCTGTCCATTTGGTGAAGGGTGCCACTTCCTGCATTATGTTCCCGGTGGTCTCAAAGTTGTCTCTCAGATGATCAGTGTTGGTGGCAATCCTACTGTTCCTCAAGTTGGTAGAAATTCTGTTCCTCCATCCTTCCCAGATGGCAGGGTTGGTGGGCGAGTTGAGCCTCCACTTGCAACCCATGGAGTAGCTGCTAGCTTTGGAGCCTCCGCTACTGCAAAAATTAGTATCAATGCTTCGTTAGCTGGAGCTGTCATTGGAAAAAATGGTGTCAACTCTAAGCAAATATGTCGTGTAACAGGAGCTAAACTTTCCATAAGGGATCATGACTCGGATCCTAACCTTAGAAACATTGAGCTTGAGGGAAGTTTTGATCAGATCAAACAAGCCAGTGCCATGGTTCATGAACTTATTCTAAATGTTAGTTCTGTCTCGGGGCCTTCAACGAAAAACATGACTACACAGACTTCTGCACCGGCTAATAACAACTACAAGACTAAGCTGTGTGAAAACTTTGCTAAAGGTTCCTGCACTTTTGGGGAAAGGTGCCACTTTGCGCATGGAACAGGTGAATTGCGCAAGCCATAG 726 0.4614 MDRKRARPEANFNGNGGAKKYRPETESFPSGLGSKSKPCTKFFSTSGCPFGEGCHFLHYVPGGLKVVSQMISVGGNPTVPQVGRNSVPPSFPDGRVGGRVEPPLATHGVAASFGASATAKISINASLAGAVIGKNGVNSKQICRVTGAKLSIRDHDSDPNLRNIELEGSFDQIKQASAMVHELILNVSSVSGPSTKNMTTQTSAPANNNYKTKLCENFAKGSCTFGERCHFAHGTGELRKP* 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g2798 241 SMART c3hfinal6 209 235 IPR000571 GO:0046872
Apr8g2798 241 SMART c3hfinal6 33 60 IPR000571 GO:0046872
Apr8g2798 241 Pfam KH domain 119 181 IPR004088 GO:0003723
Apr8g2798 241 SMART kh_6 115 185 IPR004087 GO:0003676
Apr8g2798 241 ProSiteProfiles Type-1 KH domain profile. 116 180 - -
Apr8g2798 241 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 8 82 - -
Apr8g2798 241 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 100 240 - -
Apr8g2798 241 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 108 187 IPR036612 GO:0003723
Apr8g2798 241 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 210 234 IPR000571 GO:0046872
Apr8g2798 241 ProSiteProfiles Zinc finger C3H1-type profile. 209 236 IPR000571 GO:0046872
Apr8g2798 241 SUPERFAMILY CCCH zinc finger 34 59 IPR036855 GO:0046872
Apr8g2798 241 MobiDBLite consensus disorder prediction 1 33 - -
Apr8g2798 241 Gene3D K Homology domain, type 1 111 206 IPR036612 GO:0003723
Apr8g2798 241 Gene3D - 207 240 - -
Apr8g2798 241 SUPERFAMILY CCCH zinc finger 208 239 IPR036855 GO:0046872
Apr8g2798 241 CDD KH-I 118 181 - -
Apr8g2798 241 ProSiteProfiles Zinc finger C3H1-type profile. 33 61 IPR000571 GO:0046872
Apr8g2798 241 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 14 8 82 - -
Apr8g2798 241 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 14 100 240 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g2798 Apr-Chr8 37285849 37294197 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Apr8g2798 KH_1 1.8e-11 CL0007
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g2798 - - thj:104826768 301.212