Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g2796 ATGATTTCAAATTCGGATTGTGGTGATCACAATATTGTTACATTTGATGCAGTGAAACGTGCAAGACATGAAGGGTCGTGTCAAAAGTTCAAAGGCGTTGTGCCTCAACAAAATGGGCATTGGGGTGCACAAATATATGCAAACCACCAAAGAATCTGGTTAGGGACTTTCAAATCAGAAAATGAAGCTGCAATGGCTTATGACAGCGCCAGCATTAAGCTTAGAAGCGGAGAGAGCCACAGAAACTTTCCATGGAATGATCAAGCAGTTAAAGAGCCTCAGTTTCAAAGCCATTATAGCGCAGAAACTGTGTTGACCATGATTAGAGATGGCACCTACCCATCTAAATTTGCTGCATTTCTTAGGACTCATCAAACCGGAGGCGTTGGAATTAATGTCAAACATTTGTGTTTGAAGGATGAGGAGGAACGGTTCTCTTGCACCCAACTTTTTCAAAAGGAATTAACACCAAGTGATGTGGGCAAACTCAATAGGCTTGTCATCCCAAAAAAACATGCAGTTACCTATTTTCCTTACGTTTGTGGCAGTGCAGAAGCCAATGATGAAATGGATGGTCATGGTGGTGGGTGTGTTGACAATGACAATGAGGTTGTCTTTTATGACAAGCTCATGCGGTTGTGGAAATTTCGATATTGCTATTGGAAGAGCAGCCAGAGTTATGTGTTCACAAGAGGGTGGAATAGGTTTGTGAAGGATAAGAAGTTAAAGGCGAAAGACATCATTGCATTTTATGTGTGTGAGCCTATTAATGGGAGAAGAGAGGGAGAGGGTCAAGTGTTCACATTGATCGATGTGATCTATAATGCTGATGAAATCAGGCAGTGTTCTGGAGATGAAGAGGCCAAGGATACAAAGGATTTGAATGCACCAAAAGGTTTGAGGCTTTTTGGTGTGTGTATCAAGTGA 927 0.4175 MISNSDCGDHNIVTFDAVKRARHEGSCQKFKGVVPQQNGHWGAQIYANHQRIWLGTFKSENEAAMAYDSASIKLRSGESHRNFPWNDQAVKEPQFQSHYSAETVLTMIRDGTYPSKFAAFLRTHQTGGVGINVKHLCLKDEEERFSCTQLFQKELTPSDVGKLNRLVIPKKHAVTYFPYVCGSAEANDEMDGHGGGCVDNDNEVVFYDKLMRLWKFRYCYWKSSQSYVFTRGWNRFVKDKKLKAKDIIAFYVCEPINGRREGEGQVFTLIDVIYNADEIRQCSGDEEAKDTKDLNAPKGLRLFGVCIK* 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g2796 308 Pfam B3 DNA binding domain 151 253 IPR003340 GO:0003677
Apr8g2796 308 ProSiteProfiles AP2/ERF domain profile. 29 84 IPR001471 GO:0003700|GO:0006355
Apr8g2796 308 CDD AP2 28 86 IPR001471 GO:0003700|GO:0006355
Apr8g2796 308 SUPERFAMILY DNA-binding domain 29 86 IPR016177 GO:0003677
Apr8g2796 308 Pfam AP2 domain 29 75 IPR001471 GO:0003700|GO:0006355
Apr8g2796 308 Gene3D AP2/ERF domain 28 85 IPR036955 GO:0003700|GO:0006355
Apr8g2796 308 SMART B3_2 151 261 IPR003340 GO:0003677
Apr8g2796 308 CDD B3_DNA 150 251 IPR003340 GO:0003677
Apr8g2796 308 Gene3D - 146 268 IPR015300 -
Apr8g2796 308 SMART rav1_2 29 90 IPR001471 GO:0003700|GO:0006355
Apr8g2796 308 ProSiteProfiles B3 DNA-binding domain profile. 151 272 IPR003340 GO:0003677
Apr8g2796 308 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 5 285 IPR044800 GO:0003700
Apr8g2796 308 PANTHER AP2/ERF AND B3 DOMAIN TRANSCRIPTION FACTOR 5 285 - -
Apr8g2796 308 SUPERFAMILY DNA-binding pseudobarrel domain 149 254 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g2796 Apr-Chr8 37276966 37277892 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g2796 29 308 RAV Transcription Factor Family AT1G50680 54.167 4.30e-104 306
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-RAV Apr8g2796 B3 2.2e-23 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g2796 K09287 - gmx:102660503 399.438