Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g2763 ATGGCATCGACATCTTCCGTCGGGAGGAGCTCATTACCCATGAAAGATGCAGCTTCGAGTTATTGTGCATATCCTCCTCCTTTAGCAAAATACGAGGAGGTTGCAGAGAATTCCAAGATCTTCATGTTTACTTTGGAGAGGCTTCACACTTGTATGGGTACCAAGTTCATGATTCCCATTGTTGGTGGAAGAGATCTGGATTTGCATCGCCTCTTTGTTGAAGTGACTTCCCGAGGTGGGATTGCGAAGATAATTAGAGAAAGGAAATGGAAAGATGTAACTTCAGTCTTCAATTTTCCATCAACAGCTACAAATGCTTCTTTTGTGTTGCGGAAGTACTATGCTTCGTTGCTCTATCATTATGAACAAATCTACTATTTTAAAGCCCGTGAATGGAACCCTGCTGCTCTTGATGTTTGGCATAATCAATCAACCATGCCAGTTCCTCCTCCAAGGATGCAGCAGTTTCTGCAGCGTCCATCAGAAATTCAACCGGCTGTCTTTCAACAGTCAAATGTTAATGCTGCTTTGCCTGAAGGGTCTCCAGTCATGGGGGTCATTGATGGGAAATTCGAGAGTGGGTATCTAGTTACTGTTACAATAGGTTCGGAGAAACTTAAAGGCGTACTTTATCAAGCTCCACAAAACCATGTATTTCCAACATCAAATCAGAGTCTCTCAGTTATTAACAACAGTGCCTCTGCTTCATTGGGTGTGCATAGAAGGCGACGCAGGAAGAAATCAGAAATAAAAAGGAGAGATCCTGCTCATCCTAAACCCAACCGAAGTGGGTACAATTTCTTCTTTGCTGAACAGCATGCGAGACTAAAACCACTTCACCAGGGAAAAGATAGAGAGATTAGCAGGATGATTGGCGAATTGTGGAACAAATTAACAGAGCCGGAAAAGGCGGTTTATCAAGAGAAGGCCGTGAAGGATAAAGAAAGGTACAGGGCAGAAATGGAGGATTATCGGGAGAAACAGAAGATGGGCCAAGTTATCAGTGATGCTGTGCCTCTCCAACAACGGCTTCCCGATCCAGATTCAGACATGTTGGATGCTGACATGAAACTGGATGAAGCTGGAGAAGATTCTGCTCAAACTCCGGAGGAGAGCAGTTCTGGTGGAAGTGACTATGAAGATTGTAAAGCTCCGGAGAAAGATTTTGATATGGGTGCATTTCCAGCTATAGGAGAAGGTGCTGAATCAAGCTGTTTGGGTTCAGGAGAGAAGTCATCAAAGGGGGATTTATGA 1254 0.4394 MASTSSVGRSSLPMKDAASSYCAYPPPLAKYEEVAENSKIFMFTLERLHTCMGTKFMIPIVGGRDLDLHRLFVEVTSRGGIAKIIRERKWKDVTSVFNFPSTATNASFVLRKYYASLLYHYEQIYYFKAREWNPAALDVWHNQSTMPVPPPRMQQFLQRPSEIQPAVFQQSNVNAALPEGSPVMGVIDGKFESGYLVTVTIGSEKLKGVLYQAPQNHVFPTSNQSLSVINNSASASLGVHRRRRRKKSEIKRRDPAHPKPNRSGYNFFFAEQHARLKPLHQGKDREISRMIGELWNKLTEPEKAVYQEKAVKDKERYRAEMEDYREKQKMGQVISDAVPLQQRLPDPDSDMLDADMKLDEAGEDSAQTPEESSSGGSDYEDCKAPEKDFDMGAFPAIGEGAESSCLGSGEKSSKGDL* 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g2763 417 CDD HMGB-UBF_HMG-box 258 322 - -
Apr8g2763 417 SMART hmgende2 257 326 IPR009071 -
Apr8g2763 417 Coils Coil 307 327 - -
Apr8g2763 417 MobiDBLite consensus disorder prediction 238 252 - -
Apr8g2763 417 Pfam HMG (high mobility group) box 258 325 IPR009071 -
Apr8g2763 417 ProSiteProfiles ARID domain profile. 35 126 IPR001606 GO:0003677
Apr8g2763 417 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 3 393 - -
Apr8g2763 417 MobiDBLite consensus disorder prediction 336 417 - -
Apr8g2763 417 MobiDBLite consensus disorder prediction 234 265 - -
Apr8g2763 417 SUPERFAMILY HMG-box 246 329 IPR036910 -
Apr8g2763 417 SMART bright_3 36 127 IPR001606 GO:0003677
Apr8g2763 417 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 258 325 IPR009071 -
Apr8g2763 417 PRINTS High mobility group (HMG1/HMG2) protein signature 290 309 - -
Apr8g2763 417 PRINTS High mobility group (HMG1/HMG2) protein signature 309 329 - -
Apr8g2763 417 CDD ARID_HMGB9-like 37 122 IPR045303 GO:0003677
Apr8g2763 417 Pfam ARID/BRIGHT DNA binding domain 39 122 IPR001606 GO:0003677
Apr8g2763 417 Gene3D - 27 136 IPR036431 GO:0003677
Apr8g2763 417 SUPERFAMILY ARID-like 33 129 IPR036431 GO:0003677
Apr8g2763 417 Gene3D High mobility group box domain 242 337 IPR036910 -
Apr8g2763 417 SMART ARID_2 32 122 - -
Apr8g2763 417 MobiDBLite consensus disorder prediction 348 364 - -
Apr8g2763 417 PANTHER HIGH MOBILITY GROUP B PROTEIN 15 3 393 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g2763 Apr-Chr8 37030207 37035541 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g2763 1 358 ARID Transcription Factor Family AT1G04880 59.788 6.03e-134 390
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Apr8g2763 ARID 3.5e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g2763 - - gmx:100783284 656.751