Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g2740 ATGGCGCGGATGCTACCATACGGTGATGTTGATTCGAGTTTGAGGGCCCTGGCCGGTCGCGCCGAGGGTTTCGGCCGCCACTCCATCGGTGGTCTCCACGGTTCTCTCTATTTCGTCACAACCCTTGCAGATGACGGTCCTGGGTCCCTTCGCGATGCATGTCGTAGAAAGGAACCTCTGTGGATTGTTTTTGAGGTTTCAGGTACAATTCATCTTTCATCGTACCTCAGTGTCTCATCTTATAAGACAATAGATGGCAGAGGTCAAAGGATAAAATTCACTGGCAAGGGTTTGAGGCTGAAAGAATGTGAACACATCATCATTTGCAACCTTGAGTTTGAGGGTGGTAGGGGTCATGATGTGGATGGCATTCAAATTAAACCAAATTCTAGGCATATATGGATAGATAGATGCAGTCTTCGTGATTACGATGATGGCCTCATAGACATTACTAGGCAAAGCACCGATATTACTATATCTAGGTGTTACTTTGCACAGCATGACAAGACCATGCTAATTGGAGCTGACCCGTCTCATGTTGGCGATAGGTGCATCCGTGTGACGATTCATCATTGTTTCTTTGATGGAACACGGCAAAGGCAGCCTCGTGTGAGATTTGGAAAAGTTCATCTGTACAACAATTACACCAGAAACTGGGGAATATATGCTGTTTGTGCTAGTGTTGAATCCCAGATATACTCTCAATGCAACATATATGAAGCAGGAGCTAAGAAAAAAACTTTCGAATTTTATACCGAGAAGGCTGCAGATAAGGAAGAGCAGAAGTCTGGTTTCGTAATATCTGAAGGTGACATGTTTCTGAATGGTGCTCAACCATGCTTACTAACAGAATACAGAGAAGAATCCATGTTCCATCCTAGTGAATATTATCAAACTTGGACGATGGAAGCAGCTGCACATTCTCTCAGAGAAGTCCTACAGTTATCTACAGGTTGGCAATCCATTTGTAGGCCAGTAGACAATGTGGTCATTAACTAA 999 0.4404 MARMLPYGDVDSSLRALAGRAEGFGRHSIGGLHGSLYFVTTLADDGPGSLRDACRRKEPLWIVFEVSGTIHLSSYLSVSSYKTIDGRGQRIKFTGKGLRLKECEHIIICNLEFEGGRGHDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITISRCYFAQHDKTMLIGADPSHVGDRCIRVTIHHCFFDGTRQRQPRVRFGKVHLYNNYTRNWGIYAVCASVESQIYSQCNIYEAGAKKKTFEFYTEKAADKEEQKSGFVISEGDMFLNGAQPCLLTEYREESMFHPSEYYQTWTMEAAAHSLREVLQLSTGWQSICRPVDNVVIN* 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g2740 332 Pfam Pectate lyase 76 238 IPR002022 -
Apr8g2740 332 SMART amb_all 47 245 IPR002022 -
Apr8g2740 332 PANTHER PECTATE LYASE 18-RELATED 3 326 IPR045032 GO:0030570
Apr8g2740 332 Gene3D - 7 318 IPR012334 -
Apr8g2740 332 PRINTS Pollen allergen Amb family signature 20 37 IPR018082 -
Apr8g2740 332 PRINTS Pollen allergen Amb family signature 200 219 IPR018082 -
Apr8g2740 332 PRINTS Pollen allergen Amb family signature 222 241 IPR018082 -
Apr8g2740 332 PANTHER PECTATE LYASE 3 326 - -
Apr8g2740 332 SUPERFAMILY Pectin lyase-like 18 323 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g2740 Apr-Chr8 36859765 36861746 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g2740 42 330 Polysaccharide Lyase AT3G55140 81.315 0.0 509
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g2740 K01728 - gmx:100802068 637.491