Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g2727 ATGGTTCTATCAAACAAGAAGCTCAAACTGAAGCTTAGAGCTGAATTAGCCCAACAACAAAACCAAACCAACTCCAACGTTGTCGATGTCCCTTCCTCTTCTGACTCACTAAAAAATCTTCTTGACTCTGCCACTCACACACCCAGATTGTCAAAGAGAGAGAAACTCCGAAAGATTCGATCTTTGCAACCCCCTCATCCCCAAGAACTTCCCAAAGAAGATGAAGGAGGGAACAAGGAAAGTGGAACAGAGGGTTTGGGCGTTAAGAAGAACAAAAAGAGACAGAGGAAGGTAGAGGATGATGACGTGGCAAATGGGGTTCCCAACAAATCAAAGAACAACAAGAAGTTGAAGAACAAGAACAAGAAAAAGAAAAAGAAAGCCAAAACCGCGGAAGAAGATAATTCTAATCATGGAGGGGAAACGCAAGAGGCTACAGAGTTAACTAAGACCAATACCATTACTAGTCAAGAAAATGGTGATGTTCCTACAAAGGTTTATGTTGGAGGGATTCCCTATTATTCAACTGAGGATGATATTCGGAGTTATTTTGAAAGCTGTGGCACCATAACTGAAGTTGATTGCATGACTTTTCCTGAAAGTGGCAAGTTTAGGGGAATTGCCATTATTAGTTTTAAGACAGAAGCAGCAGCCAAACGAGCATTGGCTCTTGATGGAGCTGACATGGGAGGGCTCTTTCTTAAAATCCAACCATATAAAGCAACTCGAGCCAATAAAGCAGCAGATTTTGCTCCAGAAATTATGGAGGGATACAATAGAATATATGTTGGAAATTTGTCTTGGGATATAACAGAGGAAGAACTTAGGAAATTCTTCAAAAAGTGCAAAATAACATCACTGCGATTCGGTATGGACAAGGACACAGGAGAATTTAAAGGGTATGCTCATGTGGATTTCAGTGATAGCCAGTCACTGAAAACAGCACTCACATTGGACCAAAATGTTTTGTTTGGGAGGCCTGTCAGGATAAGTTGTGCAGTTCCTTTGAAGAAAAATCCAGGAACTCATACAAGCGCAGTGTCCAAGGTCAATGGAGTTGATGGTGAGAAATCAAGTTCCACTGGAAGTGGCAAGATGAGGAGGAGGACATGCTATGAGTGTGGTGAGAAAGGACATATTCTCTCAGCATGCCCAAAGAAACAAACAGTCGCTGCAACTACAACCTAA 1188 0.4167 MVLSNKKLKLKLRAELAQQQNQTNSNVVDVPSSSDSLKNLLDSATHTPRLSKREKLRKIRSLQPPHPQELPKEDEGGNKESGTEGLGVKKNKKRQRKVEDDDVANGVPNKSKNNKKLKNKNKKKKKKAKTAEEDNSNHGGETQEATELTKTNTITSQENGDVPTKVYVGGIPYYSTEDDIRSYFESCGTITEVDCMTFPESGKFRGIAIISFKTEAAAKRALALDGADMGGLFLKIQPYKATRANKAADFAPEIMEGYNRIYVGNLSWDITEEELRKFFKKCKITSLRFGMDKDTGEFKGYAHVDFSDSQSLKTALTLDQNVLFGRPVRISCAVPLKKNPGTHTSAVSKVNGVDGEKSSSTGSGKMRRRTCYECGEKGHILSACPKKQTVAATTT* 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g2727 395 ProSiteProfiles Zinc finger CCHC-type profile. 371 386 IPR001878 GO:0003676|GO:0008270
Apr8g2727 395 MobiDBLite consensus disorder prediction 17 46 - -
Apr8g2727 395 CDD RRM1_PHIP1 166 237 IPR034361 -
Apr8g2727 395 Coils Coil 114 134 - -
Apr8g2727 395 MobiDBLite consensus disorder prediction 57 106 - -
Apr8g2727 395 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 70 392 - -
Apr8g2727 395 SUPERFAMILY Retrovirus zinc finger-like domains 358 389 IPR036875 GO:0003676|GO:0008270
Apr8g2727 395 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 259 335 IPR000504 GO:0003723
Apr8g2727 395 CDD RRM2_PHIP1 260 331 IPR034362 -
Apr8g2727 395 Gene3D - 66 250 IPR012677 -
Apr8g2727 395 MobiDBLite consensus disorder prediction 17 157 - -
Apr8g2727 395 SMART c2hcfinal6 370 386 IPR001878 GO:0003676|GO:0008270
Apr8g2727 395 Gene3D - 253 342 IPR012677 -
Apr8g2727 395 Pfam Zinc knuckle 369 386 IPR001878 GO:0003676|GO:0008270
Apr8g2727 395 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 164 241 IPR000504 GO:0003723
Apr8g2727 395 PANTHER PHRAGMOPLASTIN INTERACTING PROTEIN 1-RELATED 70 392 - -
Apr8g2727 395 SUPERFAMILY RNA-binding domain, RBD 252 352 IPR035979 GO:0003676
Apr8g2727 395 SUPERFAMILY RNA-binding domain, RBD 156 241 IPR035979 GO:0003676
Apr8g2727 395 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 261 328 IPR000504 GO:0003723
Apr8g2727 395 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 166 232 IPR000504 GO:0003723
Apr8g2727 395 Gene3D - 348 394 - -
Apr8g2727 395 MobiDBLite consensus disorder prediction 141 157 - -
Apr8g2727 395 SMART rrm1_1 260 331 IPR000504 GO:0003723
Apr8g2727 395 SMART rrm1_1 165 237 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g2727 Apr-Chr8 36788891 36793328 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g2727 164 363 Eukaryotic Initiation Factors Gene Family AT2G36660 28.241 2.60e-09 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g2727 - - gmx:100814693 528.865
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr8g2727 8 36788891 36793328 Apr8g2727 8 36788891 36793328 ECH