Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g2723 ATGAAGAGAGAAAGACAAGTTGATAGCATAACCATGGCCAACTACTTGATGTTGCTATCTCGTGGAGGAGAATTTGAGAGTAACAACTACTACAACTCTTCCAACAATCGTGTCTTTGAGTGTAAGACATGTAACCGACAATTCCCATCATTTCAGGCATTGGGTGGCCACCGTGCAAGCCACAAGAAGCCAAGGTTATTGGGAGAGGGTGATAACCAACAATTGCTTCTTGATTCACCACCCAAGCCTAAAACACATGAATGTTCAATTTGTGGATTGGAATTTGCTATAGGACAAGCTTTGGGAGGCCACATGAGGAGACACAGAACAGCAGCTTCAAATGGAAACATGCAAACTTCTTTGATGACTATGAGAAGTGGTAGCAGTGTTCATACTTCACCAAAAAACACCAACAAGCTGGTTAACAACAGCAAGAGAAATCTGTTTCCTGATTTGAATTTGACTCCTTTAGAGAATGATTTGGAGTTTTTGAAGATTGGTCCGCATGCAACTCCTTTAGTTCGTTGTTTCAATTGA 537 0.4115 MKRERQVDSITMANYLMLLSRGGEFESNNYYNSSNNRVFECKTCNRQFPSFQALGGHRASHKKPRLLGEGDNQQLLLDSPPKPKTHECSICGLEFAIGQALGGHMRRHRTAASNGNMQTSLMTMRSGSSVHTSPKNTNKLVNNSKRNLFPDLNLTPLENDLEFLKIGPHATPLVRCFN* 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g2723 178 ProSiteProfiles Zinc finger C2H2 type domain profile. 86 113 IPR013087 -
Apr8g2723 178 PANTHER ZINC FINGER PROTEIN ZAT5 11 163 - -
Apr8g2723 178 SMART c2h2final6 39 61 IPR013087 -
Apr8g2723 178 SMART c2h2final6 86 108 IPR013087 -
Apr8g2723 178 Pfam C2H2-type zinc finger 86 110 - -
Apr8g2723 178 Pfam C2H2-type zinc finger 38 64 - -
Apr8g2723 178 ProSitePatterns Zinc finger C2H2 type domain signature. 88 108 IPR013087 -
Apr8g2723 178 SUPERFAMILY beta-beta-alpha zinc fingers 37 108 IPR036236 -
Apr8g2723 178 PANTHER ZINC FINGER PROTEIN ZAT12 11 163 - -
Apr8g2723 178 ProSitePatterns Zinc finger C2H2 type domain signature. 41 61 IPR013087 -
Apr8g2723 178 Gene3D Classic Zinc Finger 21 112 - -
Apr8g2723 178 ProSiteProfiles Zinc finger C2H2 type domain profile. 39 66 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g2723 Apr-Chr8 36773394 36773936 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g2723 1 164 C2H2 Transcription Factor Family AT2G37430 43.605 3.52e-36 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Apr8g2723 zf-C2H2_6 1.6e-09 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g2723 - - gmx:100816598 245.358
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr8g2723 8 36773394 36773936 Apr8g2723 8 36773394 36773936 ECH