Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g2706 ATGGCTTCGCAATCGAGAAAGAGAGTTGACGCCGTTGATTCTCGCTCCGCTTCCGTTCTCGTTCGTGCTAAAGATGGCAGTGCTTTTGCTCGATGTGAAGAGTGTAACAAGGATGTGCCGGTGGCGCTGATCAACATGCACAGTTGCAGTCTTGAAGCTAAAATTAAAATGAACTTGGATGCTCAGGTTGTGGAACAGGCTGCTGAAGCTAAGAAGCCGGAGAGGAAGAAGCCCAAATCTAAAGAGCCAAAGGCAAAGAAGGCCAAAGTTGAGAAGGGCAAGAAGGTTAAGGATCCTAACATGCCCAAGCGTCCCCCCACAGCCTTCTTTCTCTTCTTGGATGATTTTAGAAAAACTTTTAAGGAAGCTAATCCTGATTCAAAGGACGTTAAAAGGGTTGGCAAAGAGGCTGGTGAAAAGTGGAAGTCTATGACTGATGAAGAGAAGAAGCCTTATTTGGATAAAGTTGTTGAACTCAAGGCAGAATATGAAAAGGCTATGGAAAGCTATAAAGCTGCTGAAGATGAAGATCAAGATGGGTCTGATAAGGAAATTGCCACAAAAGAAGTTGAAGAGTTAACTGACGACGAGTAA 594 0.4411 MASQSRKRVDAVDSRSASVLVRAKDGSAFARCEECNKDVPVALINMHSCSLEAKIKMNLDAQVVEQAAEAKKPERKKPKSKEPKAKKAKVEKGKKVKDPNMPKRPPTAFFLFLDDFRKTFKEANPDSKDVKRVGKEAGEKWKSMTDEEKKPYLDKVVELKAEYEKAMESYKAAEDEDQDGSDKEIATKEVEELTDDE* 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g2706 197 SUPERFAMILY HMG-box 93 173 IPR036910 -
Apr8g2706 197 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 102 171 IPR009071 -
Apr8g2706 197 PANTHER HIGH MOBILITY GROUP B PROTEIN 12-RELATED 3 191 - -
Apr8g2706 197 MobiDBLite consensus disorder prediction 168 197 - -
Apr8g2706 197 MobiDBLite consensus disorder prediction 124 146 - -
Apr8g2706 197 Gene3D High mobility group box domain 97 173 IPR036910 -
Apr8g2706 197 MobiDBLite consensus disorder prediction 168 190 - -
Apr8g2706 197 CDD HMGB-UBF_HMG-box 102 168 - -
Apr8g2706 197 Coils Coil 153 176 - -
Apr8g2706 197 MobiDBLite consensus disorder prediction 84 101 - -
Apr8g2706 197 PANTHER HIGH MOBILITY GROUP B PROTEIN 12-RELATED 3 191 - -
Apr8g2706 197 MobiDBLite consensus disorder prediction 66 104 - -
Apr8g2706 197 SMART hmgende2 101 172 IPR009071 -
Apr8g2706 197 Pfam HMG (high mobility group) box 102 171 IPR009071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g2706 Apr-Chr8 36665751 36667155 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Apr8g2706 HMG_box 7.1e-22 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g2706 K25507 - gmx:100810345 292.737