Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g2705 ATGCTTGACAATGTGGACCATGTTCATGATATCATCAACTCAACTTGGAGACTTTGTTCTCTTTTAGGCTCTTGGGTTTCTGGTTTAATATCAAAGCCAGATAAAATAGTGGTTGGCTCAGGATTTGGTGGTTCTCTTTCTAGGTTGTCTGAGGAAAGAGAAAATTGTTATTTAGATTTCATGGATGAGTGTATATACATTAGTTCGTCAGACGATGACTTGGAGGAGATAGAAGATCCAAGGAGGATTCTCCCACAATGGGCTACTTCAACTGAAAGGAATTCAGATTATGGTGGGTGGTCTAGGCAGGACAGTTCTTCAAGGGGGGCAAATAGTTCAAACACAAGTCAGTATCATACCCTACCCATGTCCAGCACAAATACACTGAACCATAGAATTGCTCAAAGAGATGAACCTTCTTATCATACCCAGAATGGAAACACAAGTCAGAATCAAACAGTTAATTCCCGAATTTCAAATACTCATGTCACAGATTATGAGAAAATGTCATCTCAACAAGCTTTCAAGAGGACCCTTCCCTCATCTCTTCAGGCATCTGCAACAAGGGCTCTCCCATCATCGTCATTTGCATCAGACAGCAGATTAAGCAACTTGAAAGATAACATGAACAGCAGTCAGTTTCATGATGCATACAAGAATCGTCGCCATGGATCAGGACCTAGCACATCCAATGACAGGGGCTACATTCGTGACGGTTTTAGCAGGGGCAATGATGAAGATCGTTTCTTGTTTCAAAATGGTGGGATTAGGATTCTTCCTTCATCTTTGATGCTAGGAAAGGGTATAGCTCCACAGTTTGCTAGTTCTAGTGAATCTGCTTACCGCTCTGGAGCAGGTGATGAAAGGGCTTCTGAAAATGATGAGAGATTGATTTATGAGGCAGCATTACAGGACATCAGTCAACAAAAAACGGAAGCTGATTTACCTGATGGTCTATTGTCTGTCTCTCTTCTGAGACATCAGAAAATTGCATTGGCTTGGATGCTTCAGAAGGAAACCAAGAGTTTGCATTGCTTGGGAGGGATTTTGGCTGATGATCAGGGCCTGGGGAAGACAATTTCGATGATTTCCCTCATCCAAGCGCAGAGGTCATTGCAGTCAAAATCAAAAACAGATGATACATGCAATCATAAAACTGAAGCTTTGAATTTGGATGATGATGATGACAGTGGTAGTGTTGATGTGGAAAAACATAAACAGAATGAAGGATCCAGTGATGTAAAACCTATTAGAGAATCAAGCAGTTCTACACAGGTGCCTAGTAGAAAAAGGCCAGCTGCTGGTACACTGGTTGTCTGCCCTGCTAGTGTTCTACGGCAATGGGCCAGGGAACTTGATGACAAAGTTGGAGACGAAAAGCTTTCTGTTTTGATTTATCATGGGGGCAGTAGGACGAAGGACCCTGTTGAACTTGCAAAATTTGATGTGGTTCTCACAACATACTCTATTGTGACTAATGAAGTTCCAAAGCAACCATTAGTTGAGGAGGATGATATTGATGAAAAGATTGGGGAAAGATATGGGTTATCCTCTGACTTTGCTGCCAGTAAAAAGAGGAAAAAGCCATATAATGAAAGTAAGAAGAGTAAAAAAGGTAGAAAAGGAATTGACAGTTCTTCAATCGATTGTGCTTCTGGTCCTCTTGCAAAAGTAGGTTGGTTCAGGGTTATTCTGGATGAGGCTCAAACAATAAAGAATCATAGAACTCAGGTGGCTAGAGCTTGCTGCAGCCTTAGAGCCAAAAGAAGGTGGTGCTTATCTGGAACGCCTATTCAAAATACTATTGATGATTTGTATAGTTACTTTAGGTTCTTGAAGTATGATCCTTATGCTGTATATAAATCGTTCTACAATACAATAAAAGTTCCAATATCCAGAAATTCTACTCAAGGTTACAAGAAACTTCAAGCAGTTTTAAGGGCCATAATGCTACGTCGTACAAAAGGAACTTTGATTGATGGGAAACCAATAATCACTTTACCTCCTAAAACAATTCACCTCACTAAGGTAGATTTCTCCATTGAGGAGCGGGCATTCTACACCAAGTTGGAAGCAGATTCACGCAATCGATTTAAGGCTTGTGACCACCCGCTTCTGGTTAAAGATTGTGATTCTGATCCTGTTGGGAAAGATTCTATTGAAATGGCAAAAAGACTTCCAAGGGATTTGCTCATTAATCTGTTTAATCGTTTGGAAACAACCTTTGCTATTTGTCTTGTTTGCAATGATCCACCTGAAGATCCTGTTATCACGATGTGTGGCCATGTCTTCTGTTATCAATGTGTATCTGAATACTTGACCGGTGATGATAATACGTGCCCTGCAGTTGATTGTAAAGAACTTATTGGCGAGGATGTTGTTTTCTCCAAAGCTACTTTGAGGAGTTGCATCTCTGATGATTGTGGTGATAGTAGTTCAGCAAATTTGGATCTTTATGATTATTCACTAGTGCAGCAAAGTGACTACACTTCATCTAAAATCAAAGCTGTCCTTGAGGTTTTGCAGTCAAATTGTAAATTGAAGATTTCTAGTTCTTACTTATCGAATTCCTTGGGAGGCTGTGGAGATTCACTGTCTTCTGATGCTGAAGACGACGATTCAGATGTTAGGGTTACAAAACACACAAGAAAATATTCGGAGTCCACAACTGAAGGACCAATCAAGGCTATAGTTTTTTCCCAGTGGACTAGCATGTTGGACTTAGTGGAAACATCATTGAGACAATCTGATATACAATACAGGAGACTTGATGGTAGGATGACTTTGGTTGCAAGGGACAAAGCTGTTAAGGATTTCAATACTGACCCTGAGATAACTGTTATGCTGATGTCACTAAAAGCTGGAAACCTTGGTTTGAATATGGTTGCTGCATGTCATGTTGTTCTTTTGGATCTATGGTGGAATCCAACAACTGAAGACCAAGCTGTTGATCGAGCTCATAGAATTGGACAGACCCGTCCTGTTACTGTGACACGGATCACTATAAAAGATACAGTTGAAGATCGGATTCTGGCTCTTCAGGAAGAAAAGAGAAAAATGGTTGCATCTGCTTTTGGAGAAGACCATGCTGGCAGTTCTGCAACTCGCCTCACAGTGGATGATCTGAAATATCTTTTCATGGTCTAG 3147 0.4061 MLDNVDHVHDIINSTWRLCSLLGSWVSGLISKPDKIVVGSGFGGSLSRLSEERENCYLDFMDECIYISSSDDDLEEIEDPRRILPQWATSTERNSDYGGWSRQDSSSRGANSSNTSQYHTLPMSSTNTLNHRIAQRDEPSYHTQNGNTSQNQTVNSRISNTHVTDYEKMSSQQAFKRTLPSSLQASATRALPSSSFASDSRLSNLKDNMNSSQFHDAYKNRRHGSGPSTSNDRGYIRDGFSRGNDEDRFLFQNGGIRILPSSLMLGKGIAPQFASSSESAYRSGAGDERASENDERLIYEAALQDISQQKTEADLPDGLLSVSLLRHQKIALAWMLQKETKSLHCLGGILADDQGLGKTISMISLIQAQRSLQSKSKTDDTCNHKTEALNLDDDDDSGSVDVEKHKQNEGSSDVKPIRESSSSTQVPSRKRPAAGTLVVCPASVLRQWARELDDKVGDEKLSVLIYHGGSRTKDPVELAKFDVVLTTYSIVTNEVPKQPLVEEDDIDEKIGERYGLSSDFAASKKRKKPYNESKKSKKGRKGIDSSSIDCASGPLAKVGWFRVILDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNTIDDLYSYFRFLKYDPYAVYKSFYNTIKVPISRNSTQGYKKLQAVLRAIMLRRTKGTLIDGKPIITLPPKTIHLTKVDFSIEERAFYTKLEADSRNRFKACDHPLLVKDCDSDPVGKDSIEMAKRLPRDLLINLFNRLETTFAICLVCNDPPEDPVITMCGHVFCYQCVSEYLTGDDNTCPAVDCKELIGEDVVFSKATLRSCISDDCGDSSSANLDLYDYSLVQQSDYTSSKIKAVLEVLQSNCKLKISSSYLSNSLGGCGDSLSSDAEDDDSDVRVTKHTRKYSESTTEGPIKAIVFSQWTSMLDLVETSLRQSDIQYRRLDGRMTLVARDKAVKDFNTDPEITVMLMSLKAGNLGLNMVAACHVVLLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRITIKDTVEDRILALQEEKRKMVASAFGEDHAGSSATRLTVDDLKYLFMV* 1049
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g2705 1048 MobiDBLite consensus disorder prediction 414 430 - -
Apr8g2705 1048 MobiDBLite consensus disorder prediction 186 215 - -
Apr8g2705 1048 CDD DEXDc_SHPRH-like 324 653 - -
Apr8g2705 1048 MobiDBLite consensus disorder prediction 186 239 - -
Apr8g2705 1048 Gene3D - 295 384 IPR038718 -
Apr8g2705 1048 Gene3D - 517 664 IPR038718 -
Apr8g2705 1048 CDD SF2_C_SNF 891 999 - -
Apr8g2705 1048 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 735 795 IPR013083 -
Apr8g2705 1048 SMART ring_2 745 783 IPR001841 -
Apr8g2705 1048 Pfam Zinc finger, C3HC4 type (RING finger) 745 781 - -
Apr8g2705 1048 SUPERFAMILY RING/U-box 741 782 - -
Apr8g2705 1048 ProSitePatterns Zinc finger RING-type signature. 760 769 IPR017907 -
Apr8g2705 1048 PANTHER HELICASE-LIKE TRANSCRIPTION FACTOR CHR28 110 1047 - -
Apr8g2705 1048 SMART ultradead3 320 632 IPR014001 -
Apr8g2705 1048 MobiDBLite consensus disorder prediction 77 124 - -
Apr8g2705 1048 SMART helicmild6 907 990 IPR001650 -
Apr8g2705 1048 MobiDBLite consensus disorder prediction 525 546 - -
Apr8g2705 1048 Pfam SNF2-related domain 327 698 IPR000330 GO:0005524|GO:0140658
Apr8g2705 1048 MobiDBLite consensus disorder prediction 386 433 - -
Apr8g2705 1048 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 110 1047 - -
Apr8g2705 1048 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 559 1042 IPR027417 -
Apr8g2705 1048 MobiDBLite consensus disorder prediction 386 413 - -
Apr8g2705 1048 Gene3D - 419 507 IPR038718 -
Apr8g2705 1048 MobiDBLite consensus disorder prediction 87 124 - -
Apr8g2705 1048 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 339 615 IPR014001 -
Apr8g2705 1048 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 312 653 IPR027417 -
Apr8g2705 1048 Gene3D - 668 1047 IPR027417 -
Apr8g2705 1048 Pfam Helicase conserved C-terminal domain 893 990 IPR001650 -
Apr8g2705 1048 ProSiteProfiles Zinc finger RING-type profile. 745 781 IPR001841 -
Apr8g2705 1048 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 877 1043 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g2705 Apr-Chr8 36652919 36664159 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g2705 61 948 RAD5 or RAD16-like Gene Family AT1G50410 53.664 0.0 870
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Apr8g2705 SNF2_N 7.8e-66 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g2705 - - gmx:100795142 1630.92