Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Apr8g2705 | ATGCTTGACAATGTGGACCATGTTCATGATATCATCAACTCAACTTGGAGACTTTGTTCTCTTTTAGGCTCTTGGGTTTCTGGTTTAATATCAAAGCCAGATAAAATAGTGGTTGGCTCAGGATTTGGTGGTTCTCTTTCTAGGTTGTCTGAGGAAAGAGAAAATTGTTATTTAGATTTCATGGATGAGTGTATATACATTAGTTCGTCAGACGATGACTTGGAGGAGATAGAAGATCCAAGGAGGATTCTCCCACAATGGGCTACTTCAACTGAAAGGAATTCAGATTATGGTGGGTGGTCTAGGCAGGACAGTTCTTCAAGGGGGGCAAATAGTTCAAACACAAGTCAGTATCATACCCTACCCATGTCCAGCACAAATACACTGAACCATAGAATTGCTCAAAGAGATGAACCTTCTTATCATACCCAGAATGGAAACACAAGTCAGAATCAAACAGTTAATTCCCGAATTTCAAATACTCATGTCACAGATTATGAGAAAATGTCATCTCAACAAGCTTTCAAGAGGACCCTTCCCTCATCTCTTCAGGCATCTGCAACAAGGGCTCTCCCATCATCGTCATTTGCATCAGACAGCAGATTAAGCAACTTGAAAGATAACATGAACAGCAGTCAGTTTCATGATGCATACAAGAATCGTCGCCATGGATCAGGACCTAGCACATCCAATGACAGGGGCTACATTCGTGACGGTTTTAGCAGGGGCAATGATGAAGATCGTTTCTTGTTTCAAAATGGTGGGATTAGGATTCTTCCTTCATCTTTGATGCTAGGAAAGGGTATAGCTCCACAGTTTGCTAGTTCTAGTGAATCTGCTTACCGCTCTGGAGCAGGTGATGAAAGGGCTTCTGAAAATGATGAGAGATTGATTTATGAGGCAGCATTACAGGACATCAGTCAACAAAAAACGGAAGCTGATTTACCTGATGGTCTATTGTCTGTCTCTCTTCTGAGACATCAGAAAATTGCATTGGCTTGGATGCTTCAGAAGGAAACCAAGAGTTTGCATTGCTTGGGAGGGATTTTGGCTGATGATCAGGGCCTGGGGAAGACAATTTCGATGATTTCCCTCATCCAAGCGCAGAGGTCATTGCAGTCAAAATCAAAAACAGATGATACATGCAATCATAAAACTGAAGCTTTGAATTTGGATGATGATGATGACAGTGGTAGTGTTGATGTGGAAAAACATAAACAGAATGAAGGATCCAGTGATGTAAAACCTATTAGAGAATCAAGCAGTTCTACACAGGTGCCTAGTAGAAAAAGGCCAGCTGCTGGTACACTGGTTGTCTGCCCTGCTAGTGTTCTACGGCAATGGGCCAGGGAACTTGATGACAAAGTTGGAGACGAAAAGCTTTCTGTTTTGATTTATCATGGGGGCAGTAGGACGAAGGACCCTGTTGAACTTGCAAAATTTGATGTGGTTCTCACAACATACTCTATTGTGACTAATGAAGTTCCAAAGCAACCATTAGTTGAGGAGGATGATATTGATGAAAAGATTGGGGAAAGATATGGGTTATCCTCTGACTTTGCTGCCAGTAAAAAGAGGAAAAAGCCATATAATGAAAGTAAGAAGAGTAAAAAAGGTAGAAAAGGAATTGACAGTTCTTCAATCGATTGTGCTTCTGGTCCTCTTGCAAAAGTAGGTTGGTTCAGGGTTATTCTGGATGAGGCTCAAACAATAAAGAATCATAGAACTCAGGTGGCTAGAGCTTGCTGCAGCCTTAGAGCCAAAAGAAGGTGGTGCTTATCTGGAACGCCTATTCAAAATACTATTGATGATTTGTATAGTTACTTTAGGTTCTTGAAGTATGATCCTTATGCTGTATATAAATCGTTCTACAATACAATAAAAGTTCCAATATCCAGAAATTCTACTCAAGGTTACAAGAAACTTCAAGCAGTTTTAAGGGCCATAATGCTACGTCGTACAAAAGGAACTTTGATTGATGGGAAACCAATAATCACTTTACCTCCTAAAACAATTCACCTCACTAAGGTAGATTTCTCCATTGAGGAGCGGGCATTCTACACCAAGTTGGAAGCAGATTCACGCAATCGATTTAAGGCTTGTGACCACCCGCTTCTGGTTAAAGATTGTGATTCTGATCCTGTTGGGAAAGATTCTATTGAAATGGCAAAAAGACTTCCAAGGGATTTGCTCATTAATCTGTTTAATCGTTTGGAAACAACCTTTGCTATTTGTCTTGTTTGCAATGATCCACCTGAAGATCCTGTTATCACGATGTGTGGCCATGTCTTCTGTTATCAATGTGTATCTGAATACTTGACCGGTGATGATAATACGTGCCCTGCAGTTGATTGTAAAGAACTTATTGGCGAGGATGTTGTTTTCTCCAAAGCTACTTTGAGGAGTTGCATCTCTGATGATTGTGGTGATAGTAGTTCAGCAAATTTGGATCTTTATGATTATTCACTAGTGCAGCAAAGTGACTACACTTCATCTAAAATCAAAGCTGTCCTTGAGGTTTTGCAGTCAAATTGTAAATTGAAGATTTCTAGTTCTTACTTATCGAATTCCTTGGGAGGCTGTGGAGATTCACTGTCTTCTGATGCTGAAGACGACGATTCAGATGTTAGGGTTACAAAACACACAAGAAAATATTCGGAGTCCACAACTGAAGGACCAATCAAGGCTATAGTTTTTTCCCAGTGGACTAGCATGTTGGACTTAGTGGAAACATCATTGAGACAATCTGATATACAATACAGGAGACTTGATGGTAGGATGACTTTGGTTGCAAGGGACAAAGCTGTTAAGGATTTCAATACTGACCCTGAGATAACTGTTATGCTGATGTCACTAAAAGCTGGAAACCTTGGTTTGAATATGGTTGCTGCATGTCATGTTGTTCTTTTGGATCTATGGTGGAATCCAACAACTGAAGACCAAGCTGTTGATCGAGCTCATAGAATTGGACAGACCCGTCCTGTTACTGTGACACGGATCACTATAAAAGATACAGTTGAAGATCGGATTCTGGCTCTTCAGGAAGAAAAGAGAAAAATGGTTGCATCTGCTTTTGGAGAAGACCATGCTGGCAGTTCTGCAACTCGCCTCACAGTGGATGATCTGAAATATCTTTTCATGGTCTAG | 3147 | 0.4061 | MLDNVDHVHDIINSTWRLCSLLGSWVSGLISKPDKIVVGSGFGGSLSRLSEERENCYLDFMDECIYISSSDDDLEEIEDPRRILPQWATSTERNSDYGGWSRQDSSSRGANSSNTSQYHTLPMSSTNTLNHRIAQRDEPSYHTQNGNTSQNQTVNSRISNTHVTDYEKMSSQQAFKRTLPSSLQASATRALPSSSFASDSRLSNLKDNMNSSQFHDAYKNRRHGSGPSTSNDRGYIRDGFSRGNDEDRFLFQNGGIRILPSSLMLGKGIAPQFASSSESAYRSGAGDERASENDERLIYEAALQDISQQKTEADLPDGLLSVSLLRHQKIALAWMLQKETKSLHCLGGILADDQGLGKTISMISLIQAQRSLQSKSKTDDTCNHKTEALNLDDDDDSGSVDVEKHKQNEGSSDVKPIRESSSSTQVPSRKRPAAGTLVVCPASVLRQWARELDDKVGDEKLSVLIYHGGSRTKDPVELAKFDVVLTTYSIVTNEVPKQPLVEEDDIDEKIGERYGLSSDFAASKKRKKPYNESKKSKKGRKGIDSSSIDCASGPLAKVGWFRVILDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNTIDDLYSYFRFLKYDPYAVYKSFYNTIKVPISRNSTQGYKKLQAVLRAIMLRRTKGTLIDGKPIITLPPKTIHLTKVDFSIEERAFYTKLEADSRNRFKACDHPLLVKDCDSDPVGKDSIEMAKRLPRDLLINLFNRLETTFAICLVCNDPPEDPVITMCGHVFCYQCVSEYLTGDDNTCPAVDCKELIGEDVVFSKATLRSCISDDCGDSSSANLDLYDYSLVQQSDYTSSKIKAVLEVLQSNCKLKISSSYLSNSLGGCGDSLSSDAEDDDSDVRVTKHTRKYSESTTEGPIKAIVFSQWTSMLDLVETSLRQSDIQYRRLDGRMTLVARDKAVKDFNTDPEITVMLMSLKAGNLGLNMVAACHVVLLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRITIKDTVEDRILALQEEKRKMVASAFGEDHAGSSATRLTVDDLKYLFMV* | 1049 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Apr8g2705 | 1048 | MobiDBLite | consensus disorder prediction | 414 | 430 | - | - | |
Apr8g2705 | 1048 | MobiDBLite | consensus disorder prediction | 186 | 215 | - | - | |
Apr8g2705 | 1048 | CDD | DEXDc_SHPRH-like | 324 | 653 | - | - | |
Apr8g2705 | 1048 | MobiDBLite | consensus disorder prediction | 186 | 239 | - | - | |
Apr8g2705 | 1048 | Gene3D | - | 295 | 384 | IPR038718 | - | |
Apr8g2705 | 1048 | Gene3D | - | 517 | 664 | IPR038718 | - | |
Apr8g2705 | 1048 | CDD | SF2_C_SNF | 891 | 999 | - | - | |
Apr8g2705 | 1048 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 735 | 795 | IPR013083 | - | |
Apr8g2705 | 1048 | SMART | ring_2 | 745 | 783 | IPR001841 | - | |
Apr8g2705 | 1048 | Pfam | Zinc finger, C3HC4 type (RING finger) | 745 | 781 | - | - | |
Apr8g2705 | 1048 | SUPERFAMILY | RING/U-box | 741 | 782 | - | - | |
Apr8g2705 | 1048 | ProSitePatterns | Zinc finger RING-type signature. | 760 | 769 | IPR017907 | - | |
Apr8g2705 | 1048 | PANTHER | HELICASE-LIKE TRANSCRIPTION FACTOR CHR28 | 110 | 1047 | - | - | |
Apr8g2705 | 1048 | SMART | ultradead3 | 320 | 632 | IPR014001 | - | |
Apr8g2705 | 1048 | MobiDBLite | consensus disorder prediction | 77 | 124 | - | - | |
Apr8g2705 | 1048 | SMART | helicmild6 | 907 | 990 | IPR001650 | - | |
Apr8g2705 | 1048 | MobiDBLite | consensus disorder prediction | 525 | 546 | - | - | |
Apr8g2705 | 1048 | Pfam | SNF2-related domain | 327 | 698 | IPR000330 | GO:0005524|GO:0140658 | |
Apr8g2705 | 1048 | MobiDBLite | consensus disorder prediction | 386 | 433 | - | - | |
Apr8g2705 | 1048 | PANTHER | TRANSCRIPTION TERMINATION FACTOR 2-RELATED | 110 | 1047 | - | - | |
Apr8g2705 | 1048 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 559 | 1042 | IPR027417 | - | |
Apr8g2705 | 1048 | MobiDBLite | consensus disorder prediction | 386 | 413 | - | - | |
Apr8g2705 | 1048 | Gene3D | - | 419 | 507 | IPR038718 | - | |
Apr8g2705 | 1048 | MobiDBLite | consensus disorder prediction | 87 | 124 | - | - | |
Apr8g2705 | 1048 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 339 | 615 | IPR014001 | - | |
Apr8g2705 | 1048 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 312 | 653 | IPR027417 | - | |
Apr8g2705 | 1048 | Gene3D | - | 668 | 1047 | IPR027417 | - | |
Apr8g2705 | 1048 | Pfam | Helicase conserved C-terminal domain | 893 | 990 | IPR001650 | - | |
Apr8g2705 | 1048 | ProSiteProfiles | Zinc finger RING-type profile. | 745 | 781 | IPR001841 | - | |
Apr8g2705 | 1048 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 877 | 1043 | IPR001650 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Apr8g2705 | Apr-Chr8 | 36652919 | 36664159 | Dispersed/Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Apr8g2705 | 61 | 948 | RAD5 or RAD16-like Gene Family | AT1G50410 | 53.664 | 0.0 | 870 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TR | SNF2 | Apr8g2705 | SNF2_N | 7.8e-66 | CL0023 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Apr8g2705 | - | - | gmx:100795142 | 1630.92 |