Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g2693 ATGTCCGAAGCACCGTCTCAGCCACCGCTCCCAACAACCGACTCGCCGTCGTACTGGTGCTACCACTGCGAAAAACGCGTCTCCATCGAAACGCTCGCCAATCTCCCAGACGTCATCTGCGGCGAGTGCAAAAACGGCTTCGTTGAATCCATCCCAACTCCTTCTCGCTCTCGCTCCCCTTCATCCTCCTCCGACGACCCCTACTTTGGCTCCCAGTTCCTCCAGGTCCTTCGCCTAATCGCACAATCGGCGCGTGACGACGACGCGTCTCCTCCTCCTCCTCCCAACCGCTCTCCGGAGAACGACTTCCTCAGGATCGAGCTCGGCGGCTGGGACAACGATGACGAGAACGACGACGACGACGACGGCGTCGAGTTTCACAACGACGGCGAAGAACACGAAGGAGATGCGGAGGAGCAGGAAGAGCGATCCGGCAACGAGGATCCACACGGAGACGATGAAGATCTGAGGCGAAGACGGCGCGAGCTGCTTCGGCTTCGGATTAGGGATTTGGCGACACGAACGAGGAGCATGCGGAACCGGATCTTGGATTGGGCCGAGATTCTGATGGGCCTGGAAGATAATTCCATAGAGTTCCGGCTCCAGTTGCCGGAATCGGACCGGTACGTCGGAAATCCGGAGGATTACGTGGACGCGGCGGAGTACGAGGCGTTGCTGCAGACGCTGGCGGAGAGCGACGGAGGAGGGAGGAGGGGAGCTCCGCCGGCGTCTAAGTCGGCGGTGGAAGCGTTGTCGACGGTGAAAATATTGTCGGGAAGTGAGGTTGTGGTGTGCGCTATATGTAAGGATTCACTCGGCGTTGGAGAGACAGCAAAGAGATTGCCGTGTGGGCATGAGTACCATGGAGATTGCATCGTTCCTTGGTTGAGTTTTAGAAATTCTTGCCCTGTCTGCAGGTTTGAGCTACCAACGGATGATAAAGAATATGAGGAAGAGAGAGTGGTTAACGCTTCTTCTGATTCTAATAACGGTAATGGTGCTTCAAGTTCAGGTGGAGCTTCCACTGTTTGA 1032 0.5659 MSEAPSQPPLPTTDSPSYWCYHCEKRVSIETLANLPDVICGECKNGFVESIPTPSRSRSPSSSSDDPYFGSQFLQVLRLIAQSARDDDASPPPPPNRSPENDFLRIELGGWDNDDENDDDDDGVEFHNDGEEHEGDAEEQEERSGNEDPHGDDEDLRRRRRELLRLRIRDLATRTRSMRNRILDWAEILMGLEDNSIEFRLQLPESDRYVGNPEDYVDAAEYEALLQTLAESDGGGRRGAPPASKSAVEALSTVKILSGSEVVVCAICKDSLGVGETAKRLPCGHEYHGDCIVPWLSFRNSCPVCRFELPTDDKEYEEERVVNASSDSNNGNGASSSGGASTV* 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g2693 343 PANTHER AMINOACYLTRANSFERASE, E1 UBIQUITIN-ACTIVATING ENZYME-RELATED 32 339 - -
Apr8g2693 343 MobiDBLite consensus disorder prediction 128 156 - -
Apr8g2693 343 MobiDBLite consensus disorder prediction 85 156 - -
Apr8g2693 343 SMART ring_2 265 305 IPR001841 -
Apr8g2693 343 MobiDBLite consensus disorder prediction 50 70 - -
Apr8g2693 343 SUPERFAMILY RING/U-box 264 312 - -
Apr8g2693 343 MobiDBLite consensus disorder prediction 49 71 - -
Apr8g2693 343 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 32 339 - -
Apr8g2693 343 MobiDBLite consensus disorder prediction 318 343 - -
Apr8g2693 343 ProSiteProfiles Zinc finger RING-type profile. 265 306 IPR001841 -
Apr8g2693 343 MobiDBLite consensus disorder prediction 112 127 - -
Apr8g2693 343 CDD RING-H2_RNF126_like 265 306 - -
Apr8g2693 343 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 233 312 IPR013083 -
Apr8g2693 343 MobiDBLite consensus disorder prediction 323 343 - -
Apr8g2693 343 Pfam Ring finger domain 265 306 IPR001841 -
Apr8g2693 343 Pfam zinc-ribbon 17 51 IPR039525 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g2693 Apr-Chr8 36586388 36589375 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g2693 176 318 C3H Transcription Factor Family AT5G01980 48.000 2.51e-32 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g2693 - - adu:107467499 493.812