Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g2682 ATGTCTTCAGGCGGCGGCGGCGGAGTTAAGCCGTTTTTCTGCCACGTGTGCAGTCGAAGAGTCACATGCTCCGATGATTCCGAACCTTTCTGCCCGATCTGTCTCGAAGGTTTCGTCGAAGAATGTAACCCTAACCCCATTACTAACCCTGAAGAATCTTTCGATCCCCATTACTCCTTCCACCGCTTATCGATTCTCCCTCTCTTGTTATCCTCGGCTTCCACCACCACCATCGACCTTCAGAACCCTCGATTCTTCTCCAGTTCTCCTGGATCCAGAACCCGCTCCGATATCCCCGAACCCGACATGTTCGACCCGTTTCTCTTCCTTCAGAACCACCTTCAGGGCCTTCGTGCCGACGGCGCTAACATTCAATTCGAGATCAACCACCCTTCCGAACCGGGGTTTCGCCTTCCGACCAACATCGGCGATTACTTCCTCGGTCCTGGCCTCGAGCAATTGATACAGCAGCTCGCTGAGAACGATCCTAATCGTTACGGCACGCCGCCCGCGGCTAAAGACGCCGTTGAGAATCTTCCGACGGTGACTGTCGGCGACGAGTTGCTCAAGTCGGAGATGAACCAGTGCGCGGTCTGCCAGGACGAGTTCGAGAAGGGTTCGCAGGTGAAGCAAATGCCTTGCAAGCACGTGTACCATGACGCGTGCTTGCTTCCCTGGCTTCAGTTGCATAATTCTTGCCCTGTGTGTCGATATGAATTGCCCACAGATGACACCGATTACGACAATCAGGCACGGGTGAACAGCGGTGATGGGTCGAGGTCTAGGGGTAATGGTGGTGGCGGCGGCGGCAACGGTGGTGGCAACAGTGGCAGTGGAGAGGGAAATAGACCAGTTCGCAGGACTTTTAGAATATCTTTGCGGTATCCTTTTGATGCAGGTGGCTCTGCGCAGGATAGTGGTGAAAGCGGATGGGGAAATTGA 942 0.5456 MSSGGGGGVKPFFCHVCSRRVTCSDDSEPFCPICLEGFVEECNPNPITNPEESFDPHYSFHRLSILPLLLSSASTTTIDLQNPRFFSSSPGSRTRSDIPEPDMFDPFLFLQNHLQGLRADGANIQFEINHPSEPGFRLPTNIGDYFLGPGLEQLIQQLAENDPNRYGTPPAAKDAVENLPTVTVGDELLKSEMNQCAVCQDEFEKGSQVKQMPCKHVYHDACLLPWLQLHNSCPVCRYELPTDDTDYDNQARVNSGDGSRSRGNGGGGGGNGGGNSGSGEGNRPVRRTFRISLRYPFDAGGSAQDSGESGWGN* 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g2682 313 CDD RING-H2_RNF126_like 195 237 - -
Apr8g2682 313 ProSiteProfiles Zinc finger RING-type profile. 196 237 IPR001841 -
Apr8g2682 313 SMART ring_2 196 236 IPR001841 -
Apr8g2682 313 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 8 300 - -
Apr8g2682 313 MobiDBLite consensus disorder prediction 244 313 - -
Apr8g2682 313 Pfam Ring finger domain 194 237 IPR001841 -
Apr8g2682 313 SUPERFAMILY RING/U-box 175 243 - -
Apr8g2682 313 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 158 243 IPR013083 -
Apr8g2682 313 PANTHER OS06G0101300 PROTEIN 8 300 - -
Apr8g2682 313 MobiDBLite consensus disorder prediction 247 261 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g2682 Apr-Chr8 36521359 36524607 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g2682 140 252 C3H Transcription Factor Family AT5G01980 46.018 5.10e-32 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g2682 K11982 - gmx:100785289 398.282