Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g2674 ATGGAGAACGACACCAGCGCCGCCGCCACCAACAACCACAACACCACCGGCAAAGTGGGTTCAGGAGGAGTGAAATCGAACAATCAGAACCGAGAAGAAGAGCATTCCAATTTGAATGGGGAGGAACACATGACGGAACATGTGGAGATTGAAGAAGAAGAAGAAGAGGATCGAGAAGCTGATGAAGAAGGAGAACCAACTGGATCTGCACCCAACCCTCGCCAACCTTCAAGAACCCCTTTCACTAATCTCAGCCAGGTCGATGCTGACCTCGCCCTTGCCCGAGCGCTTCAGGAGCAGGAAAGGGCGTATATGGTGCTGAGAATGAATAATGATGGAAGTGATTATGGAAGTTGGGAAGGTGGAAGCCATTTGCATGATGATGGGGACGATTTTGATGACCTACATGATGGCACTGATGTGGATGAGGATGAAGAAGAAGAAGATGATAATGAGGAGGAGTATGAAAATGAAGATGCATTTGATGTCCATGCTCATGCTAGTGCTGGAGAACATGATAATCCCAGCATTGAATTTGACCCAGATGTATTTTCAAGTGATGAAGCATATGCAAGAGCATTACAAGAGGCTGAAGAGAGGGAAATGGCTGCTAGACTGTTGGCTCTTGCTGGGATAAATGATAGGGAGGTGGAGGACATAGAGGAACATGGTGCGAATTCTCAGGATGCTTGGGAGGATGTTGATCCAGATGAACTTTCATATGAGGAACTGCTGGCGCTGGGTGAAGTAGTTGGAACTGAGAGCAGAGGTCTTTCGATTGACACTATTGCCTGTTTGCCTTCAGTCAACTACAAGAGTGGGAGTGATCAACATGGAAGCAATGATTCGTGTGTAATTTGCCGGGTGGACTATGAAGATGATGAATCATTGACAGTTCTTTCCTGCAAACATCTGTACCATCCCGAGTGCATTAATAATTGGTTGAAAATAAACAAGATTTGCCCAGTTTGCAGTACTGAGGTATCTGCTTCTGGGAACAACTTGTAG 1008 0.4613 MENDTSAAATNNHNTTGKVGSGGVKSNNQNREEEHSNLNGEEHMTEHVEIEEEEEEDREADEEGEPTGSAPNPRQPSRTPFTNLSQVDADLALARALQEQERAYMVLRMNNDGSDYGSWEGGSHLHDDGDDFDDLHDGTDVDEDEEEEDDNEEEYENEDAFDVHAHASAGEHDNPSIEFDPDVFSSDEAYARALQEAEEREMAARLLALAGINDREVEDIEEHGANSQDAWEDVDPDELSYEELLALGEVVGTESRGLSIDTIACLPSVNYKSGSDQHGSNDSCVICRVDYEDDESLTVLSCKHLYHPECINNWLKINKICPVCSTEVSASGNNL* 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g2674 335 PANTHER E3 UBIQUITIN LIGASE BIG BROTHER-RELATED 26 333 - -
Apr8g2674 335 SMART ring_2 284 324 IPR001841 -
Apr8g2674 335 ProSiteProfiles Zinc finger RING-type profile. 284 325 IPR001841 -
Apr8g2674 335 MobiDBLite consensus disorder prediction 133 157 - -
Apr8g2674 335 CDD RING-H2_PA-TM-RING 284 324 - -
Apr8g2674 335 MobiDBLite consensus disorder prediction 47 63 - -
Apr8g2674 335 SUPERFAMILY RING/U-box 277 330 - -
Apr8g2674 335 MobiDBLite consensus disorder prediction 70 86 - -
Apr8g2674 335 PANTHER E3 UBIQUITIN LIGASE BIG BROTHER-RELATED 26 333 IPR043312 -
Apr8g2674 335 Pfam Ring finger domain 282 324 IPR001841 -
Apr8g2674 335 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 249 331 IPR013083 -
Apr8g2674 335 MobiDBLite consensus disorder prediction 28 46 - -
Apr8g2674 335 MobiDBLite consensus disorder prediction 1 27 - -
Apr8g2674 335 MobiDBLite consensus disorder prediction 1 86 - -
Apr8g2674 335 MobiDBLite consensus disorder prediction 118 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g2674 Apr-Chr8 36481151 36487818 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g2674 67 228 C3H Transcription Factor Family AT3G19910 53.659 5.06e-38 134
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g2674 K19045 - gmx:100306465 492.656
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr8g2674 8 36481151 36487818 Apr8g1014 8 12626828 12629172 ECH
Apr8g2674 8 36481151 36487818 Apr8g2674 8 36481151 36487818 ECH