LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Apr8g2664	ATGCAAACTATCAGGAAATCTTTCAAATCGTATGGTTCATACAACAAACGTTCTGGAAGGTTTCCCAGCACCGGAAACCCCGATTCCGACCCCGAGCAGCTCCCTATTCTCCTCGACCAAGAAAACCACCGTCACACCCATTCTTTTCCGATGGCCGGAGATTGCGTCGTTAAGATCGACGACGCCGACCCTTCTCAGACAAACAAGATTTGGAGGGAGTCCAGCTATGATTTCTGGCAGGAAGAAGGCAATGCTCACGAAGAGAGCTTCGATTTTCGCCAAAAGGGTCAGGCGGAGGACCCGCCGTCGCAGCTGATCGGAAGGTTTCTCCACAAGCAGAAGGTCTCCGGCGGAGAGATGTCGCTGGACATGGATTTGGAGATGGAGGAGCTTCAGAACGACGGCAGCGGCAAGTTGACGCCGGTGGAGGAGTCTCCGATGACCCACCAAGAAGGCACAGCAAGGACTCGCCGTCGCTCTCGGACGGGTAACGGCGGTGACGGCGAGGTGGTGAGGTGCACCTCCAACGCTTCCTTTGAGAGGAACCTCTCGATGCAGAGGAAGTCCGCGTTGTTGAAGGTGAAAACCAGGTCCAGATTAATGGACCCGCCAGAAGAACCCGATAAGAAATCGAGTCGGGTTTTGAAATCGGGGCAACTCCTTTCCGGGTTTCTGGGGAAGAAGGGTGACGACGAGGAGGAAGATCCGTTTTTGGAAGAGGATCTTCCCGATGAGTTTAAAGAGAACCATTTTAGCTTCTGGATTCTTCTTGAGTGGTTGAGTTTGATTTTGATCATTGGTGTGTTGATTACAACGCTTAGTATTCCGTATTTGAGGAACAAGAATCTTTGGAACCTCAAGTTGTGGAAATGGGAGGTGATGGTTCTTGTTTTAATATGTGGCAGGTTGGTTTCTGATTGGGTTATTAGGATTGCCGTGTTCTGCATTGAGAGGAATTTCCTCTTGAGGAAGAGGGTGCTCTATTTTGTGTATGGTGTGAAGAAGGCTGTTCAGAATTGCATGTGGTTGGGGCTTGTTTTGATTGCATGGCATTTGTTGTTTGATAAGAGGGTCCAGAGGGAGACCAACAGTAATTTCCTTGAGTATGTTACTAAGGTGTTGGTATGTTTCTTGGTGGGAACTCTGGTTTGGTTGGTGAAAACTCTTGTGGTTAAGGTCCTGGCTTCTTCTTTCCATGTGAGCACCTACTTTGATAGGATTCAAGAGTCACTTTTTAATCAGTTTGTGATTGAAACACTTTCTGGGCCTCCTTTGGTGGAGCTGCAAAAGGCTGAAGAGGAGGAGGAAAGGCTTGCTGACGAGGTTCAGAAGCTGCAGAATGCTGGGAGTGGGAGGTTGAAGAGTGGAGCGCTCCAGAAAAGCCCCAGAATTAAGAGTGGCAAGTTTTCAAGGCCACTTTCTAAGAAGTCTGATGATGGCAATGGGATAACTATTGATCACTTGCATAAGCTCAATCCCAACAATGTCTCTGCATGGAATATGAAAAGGTTAATGAATATGGTCAGGCATGGTGCTCTTTCTACATTGGATGAACATATACTTGATAGCCCTCATGATGATGAGAATGCCACGCAAATTCGAAGTGAAAACGAGGCTAAAGCAGCTGCAAAGAAAATATTTCAGAATGTTGCTAGGCGCGGATGCAGGTACATATACCCGGAGGACTTGATGCGTTTTATGCGAGAAGATGAAGCTGCAAAAACCATGAATCTCTTTGAAGGAGCCACCGATACTGGGAGAATCAGCAAATCAGCCTTGAAGAACTGGGTGGTCAATGCCTTCAGGGAAAGAAGAGCACTTGCTTTGACATTGAATGACACCAAAACGGCAGTGAACAAACTTCACCGAATGCTGAATTTTGTAGTTGCAATTATTATACTGGTTATTTGGCTCTTGATATTGGAAATTGCCACCACCAAATTCCTCCTCTTCGTGAGCTCACAACTTGTCTTGGTTGCATTTATATTTGGAAACACCTGCAAGACCATATTTGAAGCAATTATTTTCTTATTTGTCATGCACCCATTTGATGTGGGAGATAGGTGTGAAATTGATGGCGTTCAGATGGTTGTGGAAGAAATGAACATATTGACTACCATATTTCTGAGATATGATAATCAAAAGGTTATCATCCCGAACAGTGTCCTTGCTACCAAGGCCATATATAACTATTACCGTAGTCCTGACATGGGAGATGCTATTGAATTCTGCATACATGTAACTACCCCACTTGAAAAGGTTTCACTTATGAAACACAGAATACAAAGTTACATTGATAACAAAAAGGAGCACTGGTATCCTTCACCTTTCATAGTCTTCAAGGATCATGAACAGTTAAACATGGTGAAAATAGCTATCTGGCCAACTCATAGAATGAACTTCCAAGACATGGGAGAAAGGTATGTCAGAAGATCCCTTTTGATTGAAGAGATGATCAAGATTTTCCGTGAACTTGACATTAATTACCGTCTCTTGCCACTCGACATAAACATTAGAGCCTTGCCTACCACTACTGAAAGGCTTCCACCAAGTTGGTCAACAATTACAAATTGA	2574	0.4495	MQTIRKSFKSYGSYNKRSGRFPSTGNPDSDPEQLPILLDQENHRHTHSFPMAGDCVVKIDDADPSQTNKIWRESSYDFWQEEGNAHEESFDFRQKGQAEDPPSQLIGRFLHKQKVSGGEMSLDMDLEMEELQNDGSGKLTPVEESPMTHQEGTARTRRRSRTGNGGDGEVVRCTSNASFERNLSMQRKSALLKVKTRSRLMDPPEEPDKKSSRVLKSGQLLSGFLGKKGDDEEEDPFLEEDLPDEFKENHFSFWILLEWLSLILIIGVLITTLSIPYLRNKNLWNLKLWKWEVMVLVLICGRLVSDWVIRIAVFCIERNFLLRKRVLYFVYGVKKAVQNCMWLGLVLIAWHLLFDKRVQRETNSNFLEYVTKVLVCFLVGTLVWLVKTLVVKVLASSFHVSTYFDRIQESLFNQFVIETLSGPPLVELQKAEEEEERLADEVQKLQNAGSGRLKSGALQKSPRIKSGKFSRPLSKKSDDGNGITIDHLHKLNPNNVSAWNMKRLMNMVRHGALSTLDEHILDSPHDDENATQIRSENEAKAAAKKIFQNVARRGCRYIYPEDLMRFMREDEAAKTMNLFEGATDTGRISKSALKNWVVNAFRERRALALTLNDTKTAVNKLHRMLNFVVAIIILVIWLLILEIATTKFLLFVSSQLVLVAFIFGNTCKTIFEAIIFLFVMHPFDVGDRCEIDGVQMVVEEMNILTTIFLRYDNQKVIIPNSVLATKAIYNYYRSPDMGDAIEFCIHVTTPLEKVSLMKHRIQSYIDNKKEHWYPSPFIVFKDHEQLNMVKIAIWPTHRMNFQDMGERYVRRSLLIEEMIKIFRELDINYRLLPLDINIRALPTTTERLPPSWSTITN*	858

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Apr8g2664	857	MobiDBLite	consensus disorder prediction	471	485	-	-
	Apr8g2664	857	Pfam	Mechanosensitive ion channel	624	828	IPR006685	GO:0016020\|GO:0055085
	Apr8g2664	857	SUPERFAMILY	Sm-like ribonucleoproteins	672	731	IPR010920	-
	Apr8g2664	857	MobiDBLite	consensus disorder prediction	1	30	-	-
	Apr8g2664	857	PANTHER	MECHANOSENSITIVE ION CHANNEL PROTEIN 5	147	855	IPR016688	-
	Apr8g2664	857	PANTHER	MECHANOSENSITIVE ION CHANNEL PROTEIN 5	5	140	IPR016688	-
	Apr8g2664	857	MobiDBLite	consensus disorder prediction	194	213	-	-
	Apr8g2664	857	Gene3D	-	682	731	IPR023408	-
	Apr8g2664	857	MobiDBLite	consensus disorder prediction	150	165	-	-
	Apr8g2664	857	PANTHER	MECHANOSENSITIVE ION CHANNEL PROTEIN	147	855	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Apr8g2664	Apr-Chr8	36400895	36405005	Dispersed/Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Apr8g2664	54	854	Mechanosensitive Ion Channel Family	AT1G78610	62.105	0.0	983

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Apr8g2664	K22048		-	gmx:102665658	1305.43

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Apr8g2664	8	36400895	36405005	Apr8g2664	8	36400895	36405005	ECH

Showing 1 to 1 of 1 entries