Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g2649 ATGATGGATTTTGATGAATATGAGTATTTAGAGAAAACTGTTGAAAATCCTGAATTTAATAAGGAGAAGCAAAATGGTGGGGACAGAACTGTGAAATCTGAAGAGAGGGGCCATAGTAGGAGTTCCAAGCATAAGGGTATTGAGAAGGACGATGATGTTGATTACCATTCCAAGCATCTGAAATCTGGAGATGATTCTCGTGATCATGACAGGTCGAAAGAAAGAGGCTCGTCTCGCCATGGTTCACAGTCTAGAGATGGAGACAAGGAGAAGGATCAGCATAGAAGCTCTGGGGGTAATAGGGATAGGAAGAGAGATAGGGAAAGAGACAATGAGGACAAGTATGGAAGGGAGAGAGACAGAGACCGGGACCGTGACCGTGACCAAGAAAGAGACAGAAGAGACCGGGGGAGTGAGAGTGAACGGGAAAGGGAGAAAGAGCACTCGCGGCGAAGCAGAAGTAGATCTGAAAGGCATCCAAGTCATCTGGATGACAAAGACAAAGAGACAAGTCGTGACAGAGAAAGAAGCCGGGATAAGGATTACAAAGATAGAGAAAGGGTGAGGGAATCAAGGGAACGAGATAGAGAAAGCAGACGACCTAAAGAGAAAAAGGAAGAAACAACAGAACCTGAGGTTGATCCTGAAAGAGATCAAAGAACTGTGTTTGCTTATCAGATTTCTCTGAAAGCAGATGAAAGAGATGCATATGAGTTCTTCTCAAGGGCTGGCAAGGTGCGAGATGTTCGCTTGATTATGGACCGCAATTCAAGACGTTCTAAGGGTGTTGGATATATTGAGTTTTATGATGTCATGTCTGTCCCCATGGCAATAGCACTTTCGGGCCAACCTCTTCTTGGTCAACCAGTGATGGTGAAGCCATCAGAAGCTGAAAAGAATTTGGTTCAGTCCACAACATCTGTTGCTAGTGGACCCACTGGAGTTATAGGCCCTTATTCAGGGGGAGCAAGAAGGCTGTATGTTGGCAATCTGCATTTCAATATCACTGAAGCTGATCTTCGCAGGGTCTTTGAAGCATTCGGTCAGGTTGAGCTAGTTCAGCTGCCTCTTGATGATAGTGGGCACTGTAAAGGTTTTGGCTTTGTTCAGTTTGTGCGCCTTGAAGATGCAAGAAATGCCCAGAGCTTGAACGGTCAATTAGAGATTGGTGGCAGGACAATCAAGGTATCGGCTGTTACTGATCAATCCGGCATGCAAGAAGTTGGTGGAAATACTGGTGATTTTGATGATGATGAAGGAGGTGGCTTGTCCCTGAATGCATGTTCGAGAGCATTACTCATGCAGAAGTTGGATCGGAGTGGCACTGCATCAAGCATGGTTGGTTCCCTTGGTAATTCTGTTGTCAACAGCTCAAGTCTTAATCTACCAGCAACAGGAAACATACCAGCAGCAGCAGCTCTTCTGGGAGCAGCATCTGTGGGTTCTCCACTGGTTTCCCCCCTTTCTTCTGTTCCTGCAGTAGCTGGATTGCCAGGTGGAGGTCTCCAAATTCCCACTGCTACAATCCCTTCTATTGATACAATAGGTGTTCCAAGTGAATGCTTATTGTTAAAGAATATGTTTGATCCCAAAGATGAGGACGAACCAGATTTTGATTTGGATATTAAGGAAGATGTTGAAGCAGAATGCTCCAAGTTTGGGAAATTAAAACACATATATGTTGACAAGAAGAGTGCTGGTTTTGTCTACTTAAGATTTGAAGATACCCAATCCGCTGTAAGTGCACAGCGGGCCTTGCACGGAAGATGGTTTGCTGGGAAGATGATCACTGCAAGCTTCATGGTGCCCCAGTCATATGAGGATAAATTCCCAGAGAGCAGATAA 1845 0.4504 MMDFDEYEYLEKTVENPEFNKEKQNGGDRTVKSEERGHSRSSKHKGIEKDDDVDYHSKHLKSGDDSRDHDRSKERGSSRHGSQSRDGDKEKDQHRSSGGNRDRKRDRERDNEDKYGRERDRDRDRDRDQERDRRDRGSESEREREKEHSRRSRSRSERHPSHLDDKDKETSRDRERSRDKDYKDRERVRESRERDRESRRPKEKKEETTEPEVDPERDQRTVFAYQISLKADERDAYEFFSRAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIALSGQPLLGQPVMVKPSEAEKNLVQSTTSVASGPTGVIGPYSGGARRLYVGNLHFNITEADLRRVFEAFGQVELVQLPLDDSGHCKGFGFVQFVRLEDARNAQSLNGQLEIGGRTIKVSAVTDQSGMQEVGGNTGDFDDDEGGGLSLNACSRALLMQKLDRSGTASSMVGSLGNSVVNSSSLNLPATGNIPAAAALLGAASVGSPLVSPLSSVPAVAGLPGGGLQIPTATIPSIDTIGVPSECLLLKNMFDPKDEDEPDFDLDIKEDVEAECSKFGKLKHIYVDKKSAGFVYLRFEDTQSAVSAQRALHGRWFAGKMITASFMVPQSYEDKFPESR* 615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g2649 614 Gene3D - 156 305 IPR012677 -
Apr8g2649 614 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 2 610 - -
Apr8g2649 614 SUPERFAMILY RNA-binding domain, RBD 516 600 IPR035979 GO:0003676
Apr8g2649 614 SUPERFAMILY RNA-binding domain, RBD 215 317 IPR035979 GO:0003676
Apr8g2649 614 SUPERFAMILY RNA-binding domain, RBD 320 416 IPR035979 GO:0003676
Apr8g2649 614 CDD RRM3_RBM39_like 519 601 - -
Apr8g2649 614 Pfam linker between RRM2 and RRM3 domains in RBM39 protein 415 538 IPR029123 -
Apr8g2649 614 Gene3D - 319 425 IPR012677 -
Apr8g2649 614 PANTHER CC1-LIKE SPLICING FACTOR 2 610 - -
Apr8g2649 614 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 520 603 IPR000504 GO:0003723
Apr8g2649 614 CDD RRM1_RBM39_like 221 293 - -
Apr8g2649 614 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 220 297 IPR000504 GO:0003723
Apr8g2649 614 SMART rrm2_1 325 397 IPR003954 GO:0003676
Apr8g2649 614 SMART rrm2_1 521 599 IPR003954 GO:0003676
Apr8g2649 614 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 324 401 IPR000504 GO:0003723
Apr8g2649 614 TIGRFAM SF-CC1: splicing factor, CC1-like family 100 611 IPR006509 GO:0003723|GO:0005634|GO:0006397
Apr8g2649 614 Gene3D - 515 614 IPR012677 -
Apr8g2649 614 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 544 596 IPR000504 GO:0003723
Apr8g2649 614 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 326 395 IPR000504 GO:0003723
Apr8g2649 614 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 231 289 IPR000504 GO:0003723
Apr8g2649 614 MobiDBLite consensus disorder prediction 1 219 - -
Apr8g2649 614 SMART rrm1_1 521 599 IPR000504 GO:0003723
Apr8g2649 614 SMART rrm1_1 325 397 IPR000504 GO:0003723
Apr8g2649 614 SMART rrm1_1 221 293 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g2649 Apr-Chr8 36275329 36284011 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g2649 237 387 Eukaryotic Initiation Factors Gene Family AT4G34110 31.373 9.52e-13 69.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g2649 K13091 - gmx:100789839 819.305
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr8g2649 8 36275329 36284011 Apr8g2649 8 36275329 36284011 ECH