Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g2643 ATGAACATCATCATGCAAAACTTAATAGAGAGACTAAGACCCCTCGTGGGTTTGAACGGATGGGACTATTGTATCAGCTGGAAATTGAGTGAAGACCAAAGTTTTCTTGAGTGGTTGGGATGCTGTTGTGCTGGCACCGAAAGCAATCAAAATGATGGGGAAGAACATATTTTCCCTGTCTCTTCAGTGGCTCCATGCAGGGATACCATGTTTCCGCACTCCAGAACAAAGCCTTGTGATCTTCTTTCCCATCTTACCACTTCCATTCCTATAGATAATTCAGGGATTCATGCACAGACACTATTAACAAATCAACCCAATTGGGTGAACTATTCCAATGGCTTGGATCCGAACATTTTGGAAGAAACAATTGGGACCCAGGTTTTGATTCCGGTGCCAGGTGGACTAGTTGAGCTGTTTGTAACCAAACAAGTGCCTGAAGATCATCAAGTAATAGATTTTGTGACAACCCAGTGCATTGCACTGGTGGAGCACTCAATAAGCTTCAACATTGACGTGAATTCAATGAGCAACATGCAACCAAACCCACTTGAAAACGAAGGGAATAAGAGAAACAACCTTTTTCAGCCTTCAGAAACTTCGAATCTCCCACATGACATCCCAATGGACCGCATTGGTCTATGCACTTCTCCACTGAACTTGATGCAACAGTTCAATTACAACCAACAGAACAGAATGAAAAAGGATGCATTTTCTGAAGAATACCAAGGCTCCTTCCTTCATGACAAGCAAACCAACCCACTCAAATCCATTTCAGAAGAGGACCATGATGCTTATCAGCAATGCATGATGACAGATTCCCAATATGTGGACATGACGGAGAAGCAAGAACACGACAAGGACTTGCTCAAACATGTCGTGGGTCGATCAGATTCAATGTCAGATTGCAGTGATCAGAATGAAGAAGAAGAAGGTGGCAAGTATAGAAGAAGGAATGGAAAAGGAAACCAGTCCAAAAACCTTGTGGCTGAAAGAAAGAGAAGGAAGAAGCTCAATGATAGATTGTATAACCTTCGTTCTTTGGTTCCAAGAATCTCTAAGTTGGATAGGGCTTCCATTCTTGGGGATGCTATTGAGTATGTTAAAGATTTGCAAAAGCAAGTGAAAGAGCTCCAAGATGAGCTTGAGGAAAATTCAGACACAGGAGCTGAAAGTAACTGCATCAATGCCAATAACAACAACAATAATCAATATGTTGGTGTAGGTGAACTTGGGCCAAAAGCTGAACATGGTAAGACCCAAACTGGGTTTCATGTAGGGACCTCAGGGAATGGATATGTGACAAAACTGAAGCAGGAAGATGCTGCTGCAATGGACAAGCAGACGCAGCAGATGGAGCCGCAAGTGGAAGTGGCTCTGATAGATGGGAATGAGTACTTTGTGAAGGTGTTCTGCGAGCACAGGCCAGGTGGGTTTGTGAAATTGATGGAGGCGTTGAACACTCTTGGCATGGATGTAGTGCATGCCACGGTGACCAGCCACAAGGGTCTTGTGTCAAATGTTTTTAAAGTGGAGAAAAAGGACAGTGAAATGGTTGAGGCTGAAGATGTGAGAGACTCACTAATGGAGCTCACGAGGAACCGATCTAGAGGATGGACTCATGAGATGACAGCAACATCAGACAATGGTGTGAGTAGGGATCAACATCACCTAAGCAGCCACCAAATGGGTGCCTATCACCCGCATCAATTTCATAGTTAA 1722 0.4367 MNIIMQNLIERLRPLVGLNGWDYCISWKLSEDQSFLEWLGCCCAGTESNQNDGEEHIFPVSSVAPCRDTMFPHSRTKPCDLLSHLTTSIPIDNSGIHAQTLLTNQPNWVNYSNGLDPNILEETIGTQVLIPVPGGLVELFVTKQVPEDHQVIDFVTTQCIALVEHSISFNIDVNSMSNMQPNPLENEGNKRNNLFQPSETSNLPHDIPMDRIGLCTSPLNLMQQFNYNQQNRMKKDAFSEEYQGSFLHDKQTNPLKSISEEDHDAYQQCMMTDSQYVDMTEKQEHDKDLLKHVVGRSDSMSDCSDQNEEEEGGKYRRRNGKGNQSKNLVAERKRRKKLNDRLYNLRSLVPRISKLDRASILGDAIEYVKDLQKQVKELQDELEENSDTGAESNCINANNNNNNQYVGVGELGPKAEHGKTQTGFHVGTSGNGYVTKLKQEDAAAMDKQTQQMEPQVEVALIDGNEYFVKVFCEHRPGGFVKLMEALNTLGMDVVHATVTSHKGLVSNVFKVEKKDSEMVEAEDVRDSLMELTRNRSRGWTHEMTATSDNGVSRDQHHLSSHQMGAYHPHQFHS* 574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g2643 573 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 10 156 IPR025610 -
Apr8g2643 573 MobiDBLite consensus disorder prediction 185 206 - -
Apr8g2643 573 CDD bHLH_AtAMS_like 325 392 - -
Apr8g2643 573 PANTHER TRANSCRIPTION FACTOR ABORTED MICROSPORES 95 541 - -
Apr8g2643 573 SUPERFAMILY ACT-like 465 533 IPR045865 -
Apr8g2643 573 Pfam Helix-loop-helix DNA-binding domain 329 372 IPR011598 GO:0046983
Apr8g2643 573 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 95 541 - -
Apr8g2643 573 MobiDBLite consensus disorder prediction 539 573 - -
Apr8g2643 573 CDD ACT_UUR-ACR-like 468 531 - -
Apr8g2643 573 Coils Coil 361 388 - -
Apr8g2643 573 MobiDBLite consensus disorder prediction 185 203 - -
Apr8g2643 573 SMART finulus 328 377 IPR011598 GO:0046983
Apr8g2643 573 MobiDBLite consensus disorder prediction 539 559 - -
Apr8g2643 573 MobiDBLite consensus disorder prediction 294 334 - -
Apr8g2643 573 Gene3D - 314 387 IPR036638 GO:0046983
Apr8g2643 573 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 322 371 IPR011598 GO:0046983
Apr8g2643 573 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 325 385 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g2643 Apr-Chr8 36230232 36232865 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g2643 5 546 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G16910 47.302 9.18e-155 454
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Apr8g2643 bHLH-MYC_N 2e-18 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g2643 - - aprc:113871920 1144.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr8g2643 8 36230232 36232865 Apr8g2643 8 36230232 36232865 ECH