Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g2638 ATGTCTTCTCATGGCAATGACATTCATTTTTACAAGAAAATTGAGGAAGACAACCTGCGAAATGGGCACATGAGGATTCCTCGAAGTTTTGTTAACAAATGTTGGGAAGAAATATCAAACCCAATAGTCCTTTTGCTACCTAACGGTGCTAAATGGGAAGTGAAATGGAAAAGGCCTGATGTTGACGTTTGGTTAAGCAATGATTGGAAGAAATTTTCCGAATTCTATGCTTTGGATGAGAACCATCTTTTGGTCTTCAGATATGTGGGGAAGTCAAGGTTTCATGTTGTAATACTTGATCAGAGTGCATTGGAAATAAAGTACCCTTTGTTGGAAGAAGCAACTTTTGATGATGAAAAGGGTGATAACTCTTCACGCCATAATAAAAGACAGAAATCTCCCTTAGCCTTTTCTAGTTTTACTAAGAAGATCAAAACTAACCCAACAAAGGAGCCTCAATGTTATCACAGTCAAGATGTTGAAACTAAACATGCTCAATCTAGAATGAATTCAAGGCCCAAAAATAAAGGTGGGGATGTGGGTGGAAGAAGATATATCTATGCCAATAGAAGTAGCTCAAAATTTAAGGCTCCTCAACGTGAGGAGTCATTGGAAGATACTGATGGTAGTAGTGCTTGGGAGAGAGCCAATGCTTTCCACTCTGAGAATCCTTTTTTCATTCGTGAAATGCACCCATCATACGTTCAAAAATATTTCTTGGTCATACCAGGCCACTTTATAAAATCATCTCAACCAGAAGGGGATGACAGTGTTACTCTGTGTGTATCTGAGGAAAGATCTTGGGGGGTCAAGTTTAAGACAAATCGTAACAATGAACAAGTGATGTTTACTACAGGTTGGATGAATTTTGTGAAGGACAATAACTTAAAAATTGGTGATGTATGTGTTTTTGAGGAGACTATGTCAGTAGGAATTTCATTTAGAGTTGTTATTTTTCGGGATAGAGAAGAATCAAGCCCTCCCCTACTTCAAGCTCATGGGGATGGTGCAAAGCAAAGAAAACGAACAAGGTTTCAAAATAGTTTCACTAAAAGGGGCTGTGAAGGAATTCCAAGAGAGGACTCAAGGGCTAATGTCATTGATGATTCTGAATTTCCAACATGTAACAACAAAATGTGGGAGAATCAATTAGCCCTCACCATAAAGTCTACTCAAATGAAGTATATGTACATACCAGTCAATTTCATAAGAAAGCTTGCCATTGATAATGTAAATGAGGTGACTCTGCAAGTTGGGAAGAGATCATGGCTCGTTAAGCTGAAGTATTATCCAATGCATAACTACGGAAGATTCTCTTTGGGTTGGTCATCATTTGTTAGGGAATGTCATTTGAAGGCCGGAGATGTTTGTTTCTTTGAGCTGATTGATAAGAGAAAAAATGTGCTTAAAGTTAAAATTTCGGGATGCATTGACTGA 1437 0.3807 MSSHGNDIHFYKKIEEDNLRNGHMRIPRSFVNKCWEEISNPIVLLLPNGAKWEVKWKRPDVDVWLSNDWKKFSEFYALDENHLLVFRYVGKSRFHVVILDQSALEIKYPLLEEATFDDEKGDNSSRHNKRQKSPLAFSSFTKKIKTNPTKEPQCYHSQDVETKHAQSRMNSRPKNKGGDVGGRRYIYANRSSSKFKAPQREESLEDTDGSSAWERANAFHSENPFFIREMHPSYVQKYFLVIPGHFIKSSQPEGDDSVTLCVSEERSWGVKFKTNRNNEQVMFTTGWMNFVKDNNLKIGDVCVFEETMSVGISFRVVIFRDREESSPPLLQAHGDGAKQRKRTRFQNSFTKRGCEGIPREDSRANVIDDSEFPTCNNKMWENQLALTIKSTQMKYMYIPVNFIRKLAIDNVNEVTLQVGKRSWLVKLKYYPMHNYGRFSLGWSSFVRECHLKAGDVCFFELIDKRKNVLKVKISGCID* 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g2638 478 Gene3D - 205 324 IPR015300 -
Apr8g2638 478 Gene3D - 363 477 IPR015300 -
Apr8g2638 478 ProSiteProfiles B3 DNA-binding domain profile. 9 102 IPR003340 GO:0003677
Apr8g2638 478 ProSiteProfiles B3 DNA-binding domain profile. 381 477 IPR003340 GO:0003677
Apr8g2638 478 SUPERFAMILY DNA-binding pseudobarrel domain 7 101 IPR015300 -
Apr8g2638 478 MobiDBLite consensus disorder prediction 146 183 - -
Apr8g2638 478 SUPERFAMILY DNA-binding pseudobarrel domain 394 472 IPR015300 -
Apr8g2638 478 Pfam B3 DNA binding domain 14 101 IPR003340 GO:0003677
Apr8g2638 478 Pfam B3 DNA binding domain 226 320 IPR003340 GO:0003677
Apr8g2638 478 Pfam B3 DNA binding domain 388 473 IPR003340 GO:0003677
Apr8g2638 478 CDD B3_DNA 9 100 IPR003340 GO:0003677
Apr8g2638 478 SUPERFAMILY DNA-binding pseudobarrel domain 219 320 IPR015300 -
Apr8g2638 478 CDD B3_DNA 224 320 IPR003340 GO:0003677
Apr8g2638 478 CDD B3_DNA 396 473 IPR003340 GO:0003677
Apr8g2638 478 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 390 473 - -
Apr8g2638 478 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 5 321 - -
Apr8g2638 478 Gene3D - 3 103 IPR015300 -
Apr8g2638 478 PANTHER B3 DOMAIN-CONTAINING 390 473 - -
Apr8g2638 478 PANTHER B3 DOMAIN-CONTAINING 5 321 - -
Apr8g2638 478 SMART B3_2 10 102 IPR003340 GO:0003677
Apr8g2638 478 SMART B3_2 226 323 IPR003340 GO:0003677
Apr8g2638 478 SMART B3_2 383 477 IPR003340 GO:0003677
Apr8g2638 478 ProSiteProfiles B3 DNA-binding domain profile. 225 322 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g2638 Apr-Chr8 36208382 36210617 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g2638 396 471 B3 DNA Binding Superfamily AT3G18990 36.842 1.03e-07 52.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Apr8g2638 B3 1.1e-18 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g2638 - - aprc:113871918 994.571