Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g2637 ATGCCTAGTGGGGAAAATGCTACCTTGCCAATCTGTTTCTTCAAGATTATTCTTAAAGCTAATATTGAAAGGCTTAAAATACCCAACAAGTTTACAAGGAGATATGGAGGTGGCTTGTCAAATCCAGTGTTTATAAAGCCTCCAGATGGCACTGAATGGAAAGTGTATTGGACAAAAGAGAATGGTGAGGTTTGGTTGGAAAAGGGTTGGAAAGAAATTGTTGAAAATTATTCACTAGATCATGGGTATTTGGTTGTTTTTAAATATGAAGGAACTTCCCACATTGATATACTCATACTTGACCACACTGCTTTAGAAATAGACTATCCTTTTTGTGACACTTATTGTGATGAAAATGACAACCTTAATCAGAATCAAACTGATGATAAATCAATTGAAATTTTGGACGAGTTTCCTGACCAAAAGGCTACACACATAACAGGTGATAAGGCTATTGAAAGAACATCTTTAAATTGGCCAACACAAACAAGAGCAAAGGAAGTTGCAATAAAATTCATCTCAAAGAACCCTTTTTTCACTGTTTACATAACACCATCTCTTCTAGGAGCAAGTCGGGTGACTCTACCAGATTTGAATGTTGATATTGAGAACAAGGAGAAGAATGTGATACTTAAGAGTGGGGACAGGTCATGGAATTTAAAGTTGCTCCGGCGTCACAACCCTTCTTCAGTTCGCAAGCTCTCTGCTGGTTGGTCCTTGTTTGTAAAGGAAAGTCAATTGATACCAGGAGATTGGTTGAGTGACACAGCTTCTCAACTTCATATTCTATTCATGGCTACTCAAATTGGCCAACGTAATGCATTCCTGCCCATCCATTTCTTCAAGATAATCATTGAATCTAATGTTGAAAAGCTTAAAATACCCAATAGCTTTACAAGGACATATGGGGATGGTTTGTCAAATCCAGTGCTTATTAAGCCTCCGGACGGCACTGAATGGGAAGTGTGTTTGACAAAAGAGAATGGTGAGGTTTGGTTCGATAAGGGTTGGAAAGAATTTGCTGAAAATTATTCCATAGGTTATGGGCATTTGGTTGTGTTTAAATATGAAGGATCCCCTCATGTTGATGTACTTATATTTGATAAGAGTGCCTTAGAAATAGATCATCCTCCTTCTGAAAATGATGATGATGAAATGGACAACCATGATGAGTGTAATGATGCATCTGTTATGATCTTGGAGGAATTCCCTCCACACCAAAAGACTAGATCAAACACACCATTGTTTTCCCCTCCACTCCACAAGAAAATGCGAAATAATACACACGAGAATGTTGAAGCAAACTCCAATTCACAGAAGTTGCAAGCAGATACAGGTGATCATTCTGAACCAGGGACAAAGTGTGTGAAGGGTACTCAAAGAACTACATCTTTGAATATGCCCAGGAGTGTTAGAGCACAGGAAAAGCATGTACCAAAGTTCATGGATATTGGGGAGAATGAGCGAAGTGTGATGATGCAGTTAGGTGAAAGATCCTGGTGTGTGAAGTTAGTTCGTGCTCCCAAAAGTTCCTATGATCGCTTCTCTTCTGGTTGGTCTGTGTTTGTAAAGGAAAGTAAATTGAAAACTGGAAACATTTGTATTTTTGAGCTCATTGACAGAGAACTTCCCTCCTTGAAAGTTCATGTTTTTTAA 1656 0.3847 MPSGENATLPICFFKIILKANIERLKIPNKFTRRYGGGLSNPVFIKPPDGTEWKVYWTKENGEVWLEKGWKEIVENYSLDHGYLVVFKYEGTSHIDILILDHTALEIDYPFCDTYCDENDNLNQNQTDDKSIEILDEFPDQKATHITGDKAIERTSLNWPTQTRAKEVAIKFISKNPFFTVYITPSLLGASRVTLPDLNVDIENKEKNVILKSGDRSWNLKLLRRHNPSSVRKLSAGWSLFVKESQLIPGDWLSDTASQLHILFMATQIGQRNAFLPIHFFKIIIESNVEKLKIPNSFTRTYGDGLSNPVLIKPPDGTEWEVCLTKENGEVWFDKGWKEFAENYSIGYGHLVVFKYEGSPHVDVLIFDKSALEIDHPPSENDDDEMDNHDECNDASVMILEEFPPHQKTRSNTPLFSPPLHKKMRNNTHENVEANSNSQKLQADTGDHSEPGTKCVKGTQRTTSLNMPRSVRAQEKHVPKFMDIGENERSVMMQLGERSWCVKLVRAPKSSYDRFSSGWSVFVKESKLKTGNICIFELIDRELPSLKVHVF* 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g2637 551 Gene3D - 277 371 IPR015300 -
Apr8g2637 551 Gene3D - 9 104 IPR015300 -
Apr8g2637 551 SMART B3_2 13 103 IPR003340 GO:0003677
Apr8g2637 551 SMART B3_2 280 370 IPR003340 GO:0003677
Apr8g2637 551 SMART B3_2 178 267 IPR003340 GO:0003677
Apr8g2637 551 SMART B3_2 455 547 IPR003340 GO:0003677
Apr8g2637 551 MobiDBLite consensus disorder prediction 430 446 - -
Apr8g2637 551 ProSiteProfiles B3 DNA-binding domain profile. 10 103 IPR003340 GO:0003677
Apr8g2637 551 CDD B3_DNA 279 368 IPR003340 GO:0003677
Apr8g2637 551 SUPERFAMILY DNA-binding pseudobarrel domain 12 110 IPR015300 -
Apr8g2637 551 MobiDBLite consensus disorder prediction 430 459 - -
Apr8g2637 551 CDD B3_DNA 491 551 IPR003340 GO:0003677
Apr8g2637 551 Pfam B3 DNA binding domain 484 551 IPR003340 GO:0003677
Apr8g2637 551 Pfam B3 DNA binding domain 280 368 IPR003340 GO:0003677
Apr8g2637 551 Pfam B3 DNA binding domain 23 93 IPR003340 GO:0003677
Apr8g2637 551 ProSiteProfiles B3 DNA-binding domain profile. 277 370 IPR003340 GO:0003677
Apr8g2637 551 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 10 252 - -
Apr8g2637 551 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 277 551 - -
Apr8g2637 551 SUPERFAMILY DNA-binding pseudobarrel domain 475 548 IPR015300 -
Apr8g2637 551 ProSiteProfiles B3 DNA-binding domain profile. 498 551 IPR003340 GO:0003677
Apr8g2637 551 Gene3D - 160 254 IPR015300 -
Apr8g2637 551 Gene3D - 407 551 IPR015300 -
Apr8g2637 551 ProSiteProfiles B3 DNA-binding domain profile. 178 268 IPR003340 GO:0003677
Apr8g2637 551 CDD B3_DNA 178 264 IPR003340 GO:0003677
Apr8g2637 551 CDD B3_DNA 12 101 IPR003340 GO:0003677
Apr8g2637 551 PANTHER B3 DOMAIN-CONTAINING 10 252 - -
Apr8g2637 551 PANTHER B3 DOMAIN-CONTAINING 277 551 - -
Apr8g2637 551 SUPERFAMILY DNA-binding pseudobarrel domain 174 253 IPR015300 -
Apr8g2637 551 SUPERFAMILY DNA-binding pseudobarrel domain 278 377 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g2637 Apr-Chr8 36200298 36204394 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g2637 276 551 B3 DNA Binding Superfamily AT3G18990 26.923 1.56e-24 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Apr8g2637 B3 1.4e-09 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g2637 - - aprc:113871917 1137.87