Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g2621 ATGGCGGCATCATCTTCCTCAGCATCGCTCTTTGGATTTAGAGAAGAGGATCAGAACCAGATGAAGCAACAGCATTCCTTGACACCAACATCATCTGCAACTCCAGCTGCACCCCCACCCCCGAAGAAAAAGAGAAACCAACCTGGAACACCAAATCCAGATGCGGAGGTGATAGCACTATCTCCCAAGACCCTAATGGCAACAAACAGGTTTATATGTGAGGTGTGCAACAAAGGGTTCCAAAGGGAGCAAAACCTACAGCTACACAGAAGAGGACACAACCTGCCTTGGAAGCTTAAGCAGAAGACTACAAAAGAGCCAAAGAAAAAGGTTTATCTGTGTCCTGAGCCCACATGCGTCCACCATGACCCTTCAAGGGCTTTAGGTGACCTCACAGGGATCAAGAAGCACTACTCTCGCAAACATGGTGAGAAGAAGTGGAAGTGTGACAAGTGCTCAAAGAAGTATGCTGTTCAATCAGATTGGAAAGCCCATTCTAAGACTTGCGGCACCAGAGAATATAGATGTGACTGTGGCACCCTCTTCTCCAGACGAGACAGCTTCATCACCCATAGGGCCTTCTGCGATGCACTGGCTCAAGAGAGTGCAAGGCAACCACCGAACCTGGGCGGTGCCATTAGCGGCCACAACTTATATGGAAGTAACAACATGGCTTTAAACTTATCTCAGGTGGGTCCCAACATGCAAGACCAAAATAACCAACCAAATGAACTATTGCGACTCGGTGGTGGTGCTGGTCGAACCGGTCAATTTGACCACATTATCGGTTCACCATTCAGATCTTCACAGCAACCCTTCTTCATGCCCGAACCGAACCAAAACTACCATCACCACCCTGAACAACAACAATGTTTGGTTCAAAACAAACCTTTCCAGGGACTAATGCAATTATCTGATCTTAACAACAATCATCATCATAATAACAGCGTGAACAATTCTCCATCAGCTGGTTCCACCCTCTTCAACCTTCCCTTTCTTTCAAGCAACACCACTAACACCACCAACACCTCCTTCTCTGAACACTTCAACAATGCCACCAATAATGGCAATGCAGGAGGCAACAATGAAGGGACCAATTTCTTCACAACTTCAAGTGCACCTTCTCTCTTCAGCACCTCTCTTCAAGGTGGCAGCAACAATAACAACAACAACAACAGTGCTATCTCTCACATGTCAGCAACTGCACTGCTTCAGAAAGCTGCACAAATGGGTGCAACTTCAAGCAACAGCACTGCTTCACTGTTGAAAAGCTTTGGAAGCGGTTCTTCTAGCAGCGGAGGATCAAAATCTGATCATAGGCCATTGGTTGCTGCTGCAAACTATGGTGGCATTTTTGGAGGAAGTGAGCATAGTAGTAATAGCAACCTGCAAGATCTTATGAACTCTTTTGCTGTTAGTGGGAACTCTTCACTTTTTGAAAGTGGATCTTCTGGAGGGTTTTCTGTTACTGGGTTTGAAGCATATGATCATAACAACAGGGACCCAAAATTGCATCCAATGAACATTGGAGGTTCTGATAGGCTCACCCGCGATTTTCTTGGTGTTGGGCAGATAGTGAGAAGCATGAGTGGTGGTGGTGGTGGAGGAGTTTCAGTTTCACACAGAGAACAACATCAGCAACGTGGGTTCAACTTGAGTTCTATGGAGGCAGAAAGAAACAATGCAGCAGCATCAGGGCAATCTTTTGGAGGTGGTGGAGGGAATTTTCAGTGA 1734 0.4625 MAASSSSASLFGFREEDQNQMKQQHSLTPTSSATPAAPPPPKKKRNQPGTPNPDAEVIALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEPKKKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCDKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAQESARQPPNLGGAISGHNLYGSNNMALNLSQVGPNMQDQNNQPNELLRLGGGAGRTGQFDHIIGSPFRSSQQPFFMPEPNQNYHHHPEQQQCLVQNKPFQGLMQLSDLNNNHHHNNSVNNSPSAGSTLFNLPFLSSNTTNTTNTSFSEHFNNATNNGNAGGNNEGTNFFTTSSAPSLFSTSLQGGSNNNNNNNSAISHMSATALLQKAAQMGATSSNSTASLLKSFGSGSSSSGGSKSDHRPLVAAANYGGIFGGSEHSSNSNLQDLMNSFAVSGNSSLFESGSSGGFSVTGFEAYDHNNRDPKLHPMNIGGSDRLTRDFLGVGQIVRSMSGGGGGGVSVSHREQHQQRGFNLSSMEAERNNAAASGQSFGGGGGNFQ* 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g2621 577 SMART c2h2final6 147 167 IPR013087 -
Apr8g2621 577 SMART c2h2final6 112 142 IPR013087 -
Apr8g2621 577 SMART c2h2final6 71 93 IPR013087 -
Apr8g2621 577 MobiDBLite consensus disorder prediction 33 47 - -
Apr8g2621 577 SUPERFAMILY beta-beta-alpha zinc fingers 70 167 IPR036236 -
Apr8g2621 577 MobiDBLite consensus disorder prediction 343 367 - -
Apr8g2621 577 Gene3D Classic Zinc Finger 125 204 - -
Apr8g2621 577 MobiDBLite consensus disorder prediction 1 56 - -
Apr8g2621 577 ProSitePatterns Zinc finger C2H2 type domain signature. 73 93 IPR013087 -
Apr8g2621 577 PANTHER ZINC FINGER PROTEIN, PUTATIVE-RELATED 1 538 - -
Apr8g2621 577 MobiDBLite consensus disorder prediction 558 577 - -
Apr8g2621 577 ProSiteProfiles Zinc finger C2H2 type domain profile. 71 93 IPR013087 -
Apr8g2621 577 MobiDBLite consensus disorder prediction 1 32 - -
Apr8g2621 577 Gene3D Classic Zinc Finger 50 118 - -
Apr8g2621 577 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 1 538 - -
Apr8g2621 577 Pfam Zinc-finger double-stranded RNA-binding 71 93 IPR022755 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g2621 Apr-Chr8 36051529 36059908 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g2621 42 534 IDZ Gene Family AT2G02070 50.540 1.45e-139 416
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Apr8g2621 zf-C2H2_jaz 3.5e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g2621 K25870 - gmx:100786121 696.041