LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Apr8g2600	ATGTTTCAGGAGAGCAGCGCCACGCGGTGGCCGACTCAGCCACTTCACCCGACTCAGTGGACACGCTACCACGACAAGCTCTTCGAGCGAGCCCTCTTGATCGTGCCGGAGGACCAGCCCGACCGGTGGGAGAAGATCGCCGAGCAGGTTCCCGGTAAGTCGGCGGCGGAGGTCAGGGAACACTACGAGGCTTTGGTTCACGACGTCTTCGAGATCGACTCGGGCCGAGTCGAGGTGCCGAGTTACGTTGATGACTCGGCGGTGTCCAGTGGCGGCGTGTCTTCGTGGGACTCTTCAAATCAGATCTCATTTGGGTCCAAACCCAGGCATGGCGACAACGAAAGGAAGAAAGGAACGCCTTGGACTGAAGAAGAACACAGGCTGTTCCTAATTGGGCTAAGTAAATTTGGCAAAGGAGATTGGAGAAGCATATCAAGAAATGTTGTTGTGACAAGAACACCGACTCAAGTAGCTAGTCATGCCCAAAAGTACTTCCTTCGCCAAAATTCAGTGAAGAAAGAGAGGAAAAGGTCAAGCATTCATGACATAACCACTGTGGATAGTAACTCCGTGCCTGTGCCCATTGATCAGAATTGGGTTCCTCCTCCGGGTGGTTCGGTGCAGCAGTCACGAGAGATGCAGCAGTATCCATCAAATAACTTGCATGACCAAATGGGTAGATTTGGTTACTCAAATTATGGCTTTGAAATGTAA	714	0.5182	MFQESSATRWPTQPLHPTQWTRYHDKLFERALLIVPEDQPDRWEKIAEQVPGKSAAEVREHYEALVHDVFEIDSGRVEVPSYVDDSAVSSGGVSSWDSSNQISFGSKPRHGDNERKKGTPWTEEEHRLFLIGLSKFGKGDWRSISRNVVVTRTPTQVASHAQKYFLRQNSVKKERKRSSIHDITTVDSNSVPVPIDQNWVPPPGGSVQQSREMQQYPSNNLHDQMGRFGYSNYGFEM*	238

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Apr8g2600	237	CDD	SANT	120	165	IPR001005	-
	Apr8g2600	237	ProSiteProfiles	SANT domain profile.	116	169	IPR017884	-
	Apr8g2600	237	ProSiteProfiles	Myb-like domain profile.	113	165	IPR001005	-
	Apr8g2600	237	SUPERFAMILY	Homeodomain-like	115	170	IPR009057	-
	Apr8g2600	237	CDD	SANT	20	66	IPR001005	-
	Apr8g2600	237	Gene3D	-	119	171	-	-
	Apr8g2600	237	TIGRFAM	myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class	116	168	IPR006447	GO:0003677
	Apr8g2600	237	Pfam	Myb-like DNA-binding domain	120	165	IPR001005	-
	Apr8g2600	237	PANTHER	DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED	15	237	IPR043363	-
	Apr8g2600	237	MobiDBLite	consensus disorder prediction	89	107	-	-
	Apr8g2600	237	SMART	sant	117	167	IPR001005	-
	Apr8g2600	237	SMART	sant	16	68	IPR001005	-
	Apr8g2600	237	Gene3D	-	16	79	-	-
	Apr8g2600	237	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	113	169	IPR017930	-
	Apr8g2600	237	PANTHER	SYRINGOLIDE-INDUCED PROTEIN 1-3-1B	15	237	-	-
	Apr8g2600	237	ProSiteProfiles	Myb-like domain profile.	12	66	IPR001005	-
	Apr8g2600	237	MobiDBLite	consensus disorder prediction	89	120	-	-
	Apr8g2600	237	SUPERFAMILY	Homeodomain-like	18	74	IPR009057	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Apr8g2600	Apr-Chr8	35917544	35919214	Dispersed/Transposed

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB	Apr8g2600		Myb_DNA-binding	4.3e-11	CL0123

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Apr8g2600	-		-	gmx:547481	407.527