Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g2595 ATGCTTCCCATCACCTGCATTCTTTTAATGTGCCTCCTCAGTTCATTCTCACCCCCAATCAAGGCAGTCCACAACCTCAACCTCACCTTACCCCACCAACACCCTTACCCTGAAGCGGTCGTTCACGAACTTCAACGGAAAGTCAATGCCTCACTCTCCAGACGCCAAATGCTCTCAAAGGACCAAGCTCCCTGCCTCACTGGAAACCCCGTCGACGATTGCTGGCGCTGCGACCCAAACTGGGCCGCCAACCGCCAGAAGCTGGCCGACTGCGGCGTCGGGTTCGGCCGCGACGCCATGGGCGGAAAGGGCGGTCAGATCTACGTTGTCACGGACTCCTCCGACCGGGACCCTGCCAACCCGACGCCCGGCACGCTCCGGCACGCCGTCATCCAAGACGAGCCACTCTGGATCGTGTTCGCCGCCGACATGACCATAACGCTAAAACACGAACTCATCTTCAACAGCTATAAAACGGTGGACGGGCGCGGAGCCAACGTGCACGTGACGGGGCACGGGTGCATCACGCTTCAGTACGTGTCGAACGTGATCATCCACAACATCCACGTGCACCACTGCAAGCCCTCCGGGAACACTAACATACGCGCGAGTCCAACGCACGTAGGGTGGAGAGGCGTATCGGACGGCGACGGGATATCGATATTTGGTTCGCGGAAGATCTGGATCGACCATTGTTCGCTGTCGTACTGCACGGACGGCTTGATCGACGCCATCATGGGGTCGACGGGGATAACCATTTCGAATAACCATTTCGCGCACCATGATGAGGTGATGCTTTTGGGTCACACCGACAAGTACTTACCCGATAGGGGCATGCAGGTTACGATTGCGTTTAATCACTTTGGGGAGGGTTTGGTGCAGCGCATGCCACGGTGCAGACTCGGTTATATCCACGTCGTCAACAACGATTTCACACAGTGGCAGATGTATGCTATCGGCGGTAGCGCTAACCCCACCATTAACAGCCAGGGTAACCGTTACACTGCTCCCTCCGACCCTAATGCCAAAGAGGTGACGAAGCGCGTGGACACGGACGAGGGGCAGTGGAGTGACTGGAACTGGAGGACGGAGGGGGACATAATGGTAAATGGAGCGTTCTTTGTGCCTTCGGGTGCAGGCCTTAGTGCTCAGTACGCGGAAGCCACGAGCGTCCAACCCAAATCCGCCGTGCAGATTGACCAGCTCACCATGTACTCCGGTGTCTTCGGTGATCCCAGGGATAATGGGGATTTATATCCCGGTTTCAACGGAGGTGGGACCATAACCGGAGCCACCAGCAAAGGTAACAATGAGGGGTCCAGCGGTGACGATGGGGACTTCTTTGGGATGATATTCAGAGGTAGCAGCAGCCAAGCAGCAGCACCATTAACTTTCTCATCCATTGTATTTGTTTCAACCTTTTTGTCTCTTTTAATTATTTTCATTTTGGACACTACCACCTACCATGCCATTCTATTATCATTTCTATGA 1491 0.5506 MLPITCILLMCLLSSFSPPIKAVHNLNLTLPHQHPYPEAVVHELQRKVNASLSRRQMLSKDQAPCLTGNPVDDCWRCDPNWAANRQKLADCGVGFGRDAMGGKGGQIYVVTDSSDRDPANPTPGTLRHAVIQDEPLWIVFAADMTITLKHELIFNSYKTVDGRGANVHVTGHGCITLQYVSNVIIHNIHVHHCKPSGNTNIRASPTHVGWRGVSDGDGISIFGSRKIWIDHCSLSYCTDGLIDAIMGSTGITISNNHFAHHDEVMLLGHTDKYLPDRGMQVTIAFNHFGEGLVQRMPRCRLGYIHVVNNDFTQWQMYAIGGSANPTINSQGNRYTAPSDPNAKEVTKRVDTDEGQWSDWNWRTEGDIMVNGAFFVPSGAGLSAQYAEATSVQPKSAVQIDQLTMYSGVFGDPRDNGDLYPGFNGGGTITGATSKGNNEGSSGDDGDFFGMIFRGSSSQAAAPLTFSSIVFVSTFLSLLIIFILDTTTYHAILLSFL* 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g2595 496 SMART amb_all 143 340 IPR002022 -
Apr8g2595 496 Gene3D - 68 410 IPR012334 -
Apr8g2595 496 Pfam Pectate lyase 150 332 IPR002022 -
Apr8g2595 496 SUPERFAMILY Pectin lyase-like 62 401 IPR011050 -
Apr8g2595 496 PRINTS Pollen allergen Amb family signature 91 108 IPR018082 -
Apr8g2595 496 PRINTS Pollen allergen Amb family signature 115 140 IPR018082 -
Apr8g2595 496 PRINTS Pollen allergen Amb family signature 151 167 IPR018082 -
Apr8g2595 496 PRINTS Pollen allergen Amb family signature 215 236 IPR018082 -
Apr8g2595 496 PRINTS Pollen allergen Amb family signature 295 314 IPR018082 -
Apr8g2595 496 PRINTS Pollen allergen Amb family signature 317 336 IPR018082 -
Apr8g2595 496 PRINTS Pollen allergen Amb family signature 359 383 IPR018082 -
Apr8g2595 496 PRINTS Pollen allergen Amb family signature 388 411 IPR018082 -
Apr8g2595 496 PANTHER PECTATE LYASE 6 430 - -
Apr8g2595 496 PANTHER PECTATE LYASE 18-RELATED 6 430 IPR045032 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g2595 Apr-Chr8 35858246 35863252 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g2595 1 488 Polysaccharide Lyase AT3G53190 63.489 0.0 596
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g2595 K01728 - gmx:100808438 887.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr8g2595 8 35858246 35863252 Apr8g2595 8 35858246 35863252 ECH