Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g2590 ATGGCTGCAAAGGAAGAGAATCGAATATTTGTGGGAGGGTTGTCCTGGGACGTTACGGAGCGTCAGCTCGAGCATGCCTTTGGCCGTTACGGCAAAATTCTTGAATGCCAGATCATGATGGAAAGAGATACAGGCCGTCCACGTGGATTTGGGTTTATTACATTTGCAGACCGTAGGGGAATGGAGGACGCAATCAAGGAAATGCATGGGCGGGAAATTGGGGATCGCATCATCTCAGTTAATAAGGCACAGCCCAAGATGGGGGGTGATGATTTAGACCAAGGTTACAGAGGTGGCTACTCATCAGGTGGTAGGGGAAGCTATGGTGCTGGAGATAGGATAGGGCAGGATGACTGCTTCAAATGTGGGCGTCCAGGGCATTGGGCCCGAGATTGTCCTTTGGCAGGTGGTGGTGGTGGTCGTGGTCGGGGTGGTAGTTCCTTTTCTTCACGCCCTAGGTTTGGAGGTGCTGGTGATCGCCTTAGTGGTGAACGTGATCGTTATATTGATGATCGTTATGACAGCGGACGGTATGGTGATCGGGATCGTTTTGATAACTGTGACTACAAATATGGCAGCCGTGATCGCTATACTAGTGACAGGTATGCAACTGGTGGAGATCGATTTGCAAGTGATCGATATGGCAGTGGCTCGGATCATTACCCACAGAATGGTTATGGCAAGGAAAGAGGCTACGACCGGTATGGCGGTGGCGGTCCACGAGGAGGTGCTGATAGGTATGGAAGTGGAATGCCAGCCCGAGAAGAAGGAAGGAACTATAGGGGTAGGCCTGGTCCCTATGACCGCCCTAGTAGGGGTGGTCGTCCATCATCATTTGACCGCTACTGA 849 0.5171 MAAKEENRIFVGGLSWDVTERQLEHAFGRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDAIKEMHGREIGDRIISVNKAQPKMGGDDLDQGYRGGYSSGGRGSYGAGDRIGQDDCFKCGRPGHWARDCPLAGGGGGRGRGGSSFSSRPRFGGAGDRLSGERDRYIDDRYDSGRYGDRDRFDNCDYKYGSRDRYTSDRYATGGDRFASDRYGSGSDHYPQNGYGKERGYDRYGGGGPRGGADRYGSGMPAREEGRNYRGRPGPYDRPSRGGRPSSFDRY* 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g2590 282 Pfam Zinc knuckle 119 133 IPR001878 GO:0003676|GO:0008270
Apr8g2590 282 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN RZ1B-LIKE 1 239 - -
Apr8g2590 282 SUPERFAMILY Retrovirus zinc finger-like domains 103 138 IPR036875 GO:0003676|GO:0008270
Apr8g2590 282 SUPERFAMILY RNA-binding domain, RBD 5 111 IPR035979 GO:0003676
Apr8g2590 282 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 85 IPR000504 GO:0003723
Apr8g2590 282 MobiDBLite consensus disorder prediction 135 163 - -
Apr8g2590 282 Gene3D - 116 143 - -
Apr8g2590 282 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 78 IPR000504 GO:0003723
Apr8g2590 282 Gene3D - 1 115 IPR012677 -
Apr8g2590 282 MobiDBLite consensus disorder prediction 198 282 - -
Apr8g2590 282 PANTHER TRANSFORMER-2-RELATED 1 239 - -
Apr8g2590 282 ProSiteProfiles Zinc finger CCHC-type profile. 119 133 IPR001878 GO:0003676|GO:0008270
Apr8g2590 282 SMART rrm1_1 8 81 IPR000504 GO:0003723
Apr8g2590 282 SMART c2hcfinal6 118 134 IPR001878 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g2590 Apr-Chr8 35816970 35822190 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g2590 9 88 C2H2 Transcription Factor Family AT2G19380 43.750 1.39e-14 71.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr8g2590 8 35816970 35822190 Apr8g2590 8 35816970 35822190 ECH