Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g2576 ATGAAGATTTTCGTGAAGACTCTCAAAGGCTCCCACTTCGAAATCGAAGTGGAGCCCCAAGACACGGTTTCTGCAGTGAAGAACAATATAGAAACTGTTCAGGGTGTAGATGTCTATCCTGCTGCACAGCAAATGCTTATTCATCAAGGGAAAGTTCTTAAAGATGCTAGTACGTTGGAAGAAAATAAAGTAGCTGAGAATAGTTTCATTGTAGTTATGCTATCAAAGAGTAAGGGCACATCTGGTGAAGGATCTACTACTTCAACTGCACAATCAACCAAGGCCCCACAGACAATTGCTGCTCCTACTTCAACCCCGCCAGTGTCAACAACGCCTCAGGCTCCTGCTGCAACTGGGGCACCGCCTGAATCTGTTACTGCAACTGCAACTGCACCTTCACCTTCACCAGCTCCTGCTCCCATATCTTCTGGGACTGCTGGGGAAGGGTCTGATGTCTATGGGCAAGCTGCATCCAATCTGGTTGCCGGAAGCAACTTGGAGGAAACAATTCAGCAAATTCTTGATATGGGTGGAGGGAGCTGGGATAGGGATACTGTTGTCCGTGCTCTTCGAGCTGCTTACAACAACCCTGAGAGAGCTGTTGAATATTTGTATACAGGCATCCCTGAGCAAGCTGAAGCTCCACTTGTTGCTCGAGTGCCTGCAAGTTCTCAACCTGCAAATCCTCCTGCTGCTGCTCCACAAACAGCGCAACCAGCTCCAGTTACCTCAAGTGGACCTAATGCTAATCCATTAGACCTTTTTCCCCAGGGCCTCCCCAATGTTGGTTCTGGTGCTGCTGGTGCTGGCTCATTAGATTTTCTACGCAACAGTCAACAATTCCAAGCCTTGCGAGCTATGGTACAGGCTAATCCACAAATTTTGCAGCCTATGCTACAAGAGCTTGGCAAACAAAATCCTCATCTTATGAGATTAATTCGAGATCATCAAGCTGACTTCCTTCGCCTTATAAATGAACCGGTGGAAGGTGGTGAAGGGAACATATTAGGTCAGATGGCTTCTGGCATGCCACAAGCTGTAACTGTCACCCCCGAAGAGCGCCAAGCAATTGAGCGTCTTGAAGCAATGGGTTTCGATCGTGCAATTGTATTGGAGGTGTACTTCGCTTGTAACAAAAATGAGGAATTGGCTGCTAACTACCTTTTAGATCACATGCATGAGTTCGAGGAACAATAG 1197 0.472 MKIFVKTLKGSHFEIEVEPQDTVSAVKNNIETVQGVDVYPAAQQMLIHQGKVLKDASTLEENKVAENSFIVVMLSKSKGTSGEGSTTSTAQSTKAPQTIAAPTSTPPVSTTPQAPAATGAPPESVTATATAPSPSPAPAPISSGTAGEGSDVYGQAASNLVAGSNLEETIQQILDMGGGSWDRDTVVRALRAAYNNPERAVEYLYTGIPEQAEAPLVARVPASSQPANPPAAAPQTAQPAPVTSSGPNANPLDLFPQGLPNVGSGAAGAGSLDFLRNSQQFQALRAMVQANPQILQPMLQELGKQNPHLMRLIRDHQADFLRLINEPVEGGEGNILGQMASGMPQAVTVTPEERQAIERLEAMGFDRAIVLEVYFACNKNEELAANYLLDHMHEFEEQ* 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g2576 398 Gene3D - 345 392 - -
Apr8g2576 398 MobiDBLite consensus disorder prediction 77 150 - -
Apr8g2576 398 Gene3D - 159 209 - -
Apr8g2576 398 Gene3D - 263 328 IPR036353 GO:0003684|GO:0006289|GO:0043161
Apr8g2576 398 SUPERFAMILY UBA-like 163 216 IPR009060 GO:0005515
Apr8g2576 398 Pfam UBA/TS-N domain 353 388 IPR015940 -
Apr8g2576 398 Pfam UBA/TS-N domain 166 204 IPR015940 -
Apr8g2576 398 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 350 391 IPR015940 -
Apr8g2576 398 SMART ubq_7 1 75 IPR000626 GO:0005515
Apr8g2576 398 CDD UBA1_Rad23_plant 160 209 - -
Apr8g2576 398 Gene3D - 1 80 - -
Apr8g2576 398 MobiDBLite consensus disorder prediction 221 250 - -
Apr8g2576 398 Pfam XPC-binding domain 272 327 IPR015360 GO:0003684|GO:0006289|GO:0043161
Apr8g2576 398 SMART CBM 270 313 IPR006636 -
Apr8g2576 398 Pfam Ubiquitin family 3 76 IPR000626 GO:0005515
Apr8g2576 398 SMART uba_6 166 206 IPR015940 -
Apr8g2576 398 SMART uba_6 353 390 IPR015940 -
Apr8g2576 398 SUPERFAMILY UBA-like 334 395 IPR009060 GO:0005515
Apr8g2576 398 SUPERFAMILY Ubiquitin-like 1 81 IPR029071 -
Apr8g2576 398 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 164 207 IPR015940 -
Apr8g2576 398 TIGRFAM rad23: UV excision repair protein Rad23 1 396 IPR004806 GO:0006289
Apr8g2576 398 PANTHER UV EXCISION REPAIR PROTEIN RAD23 1 397 - -
Apr8g2576 398 SUPERFAMILY XPC-binding domain 269 334 IPR036353 GO:0003684|GO:0006289|GO:0043161
Apr8g2576 398 PANTHER UV EXCISION REPAIR PROTEIN RAD23-RELATED 1 397 - -
Apr8g2576 398 MobiDBLite consensus disorder prediction 77 132 - -
Apr8g2576 398 CDD Ubl_Rad23 1 74 - -
Apr8g2576 398 ProSiteProfiles Ubiquitin domain profile. 1 79 IPR000626 GO:0005515
Apr8g2576 398 PRINTS DNA repair protein Rad23 signature 298 320 IPR004806 GO:0006289
Apr8g2576 398 PRINTS DNA repair protein Rad23 signature 347 363 IPR004806 GO:0006289
Apr8g2576 398 PRINTS DNA repair protein Rad23 signature 364 378 IPR004806 GO:0006289
Apr8g2576 398 PRINTS DNA repair protein Rad23 signature 379 394 IPR004806 GO:0006289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g2576 Apr-Chr8 35723541 35727735 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g2576 1 79 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 39.241 1.29e-09 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g2576 K10839 - gmx:100814162 630.557